Strain identifier

BacDive ID: 11065

Type strain: Yes

Species: Aeromicrobium ponti

Strain Designation: HSW-1

Strain history: KACC 20565 <-- S. D. Lee HSW-1.

NCBI tax ID(s): 460257 (species)

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General

@ref: 7950

BacDive-ID: 11065

DSM-Number: 19178

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped

description: Aeromicrobium ponti HSW-1 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from sea water.

NCBI tax id

  • NCBI tax id: 460257
  • Matching level: species

strain history

@refhistory
7950<- Soon Dong Lee; HSW-1
67770KACC 20565 <-- S. D. Lee HSW-1.

doi: 10.13145/bacdive11065.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Nocardioidaceae
  • genus: Aeromicrobium
  • species: Aeromicrobium ponti
  • full scientific name: Aeromicrobium ponti Lee and Lee 2008

@ref: 7950

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardioidaceae

genus: Aeromicrobium

species: Aeromicrobium ponti

full scientific name: Aeromicrobium ponti Lee and Lee 2008

strain designation: HSW-1

type strain: yes

Morphology

cell morphology

  • @ref: 32492
  • gram stain: positive
  • cell length: 2.4 µm
  • cell width: 0.7 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

@refcolony colorincubation periodmedium used
19776Saffron yellow (1017)10-14 daysISP 2
19776Saffron yellow (1017)10-14 daysISP 7

multicellular morphology

@refforms multicellular complexmedium name
19776noISP 2
19776noISP 3
19776noISP 4
19776noISP 5
19776noISP 6
19776noISP 7

pigmentation

  • @ref: 32492
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7950TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
19776ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19776ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes

culture temp

@refgrowthtypetemperaturerange
7950positivegrowth28mesophilic
19776positiveoptimum28mesophilic
32492positivegrowth04-42
32492positiveoptimum33.5mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
32492positivegrowth4.1-12.1alkaliphile
32492positiveoptimum6.1

Physiology and metabolism

oxygen tolerance

  • @ref: 32492
  • oxygen tolerance: aerobe

halophily

  • @ref: 32492
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <10 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3249222599arabinose+carbon source
3249217057cellobiose+carbon source
3249216947citrate+carbon source
3249228260galactose+carbon source
3249217234glucose+carbon source
3249217306maltose+carbon source
3249217814salicin+carbon source
3249218222xylose+carbon source
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea+hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
32492acid phosphatase+3.1.3.2
32492alkaline phosphatase+3.1.3.1
32492catalase+1.11.1.6
32492gelatinase+
68379gelatinase+
68379urease+3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
19776---+--+--++--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
19776+-+++--+-++---++---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7950sea waterJejuRepublic of KoreaKORAsia
67770Seawater at Hwasun Beach on the coast of Jeju IslandRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_3426.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_1793;97_2145;98_2628;99_3426&stattab=map
  • Last taxonomy: Aeromicrobium ponti
  • 16S sequence: AM778683
  • Sequence Identity:
  • Total samples: 246
  • soil counts: 144
  • aquatic counts: 41
  • animal counts: 40
  • plant counts: 21

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
79501Risk group (German classification)
197761Risk group

Sequence information

16S sequences

  • @ref: 7950
  • description: Aeromicrobium ponti partial 16S rRNA gene, type strain HSW-1T
  • accession: AM778683
  • length: 1396
  • database: ena
  • NCBI tax ID: 460257

GC content

@refGC-contentmethod
795074
6777074high performance liquid chromatography (HPLC)

External links

@ref: 7950

culture collection no.: DSM 19178, KACC 20565, JCM 16375

straininfo link

  • @ref: 80314
  • straininfo: 397644

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18398207Aeromicrobium ponti sp. nov., isolated from seawater.Lee DW, Lee SDInt J Syst Evol Microbiol10.1099/ijs.0.65575-02008Actinomycetales/*classification/genetics/*isolation & purification/metabolism, Base Composition, DNA, Bacterial/chemistry/genetics, Fatty Acids/metabolism, Genes, Bacterial, Korea, Molecular Sequence Data, Phenotype, Phospholipids/metabolism, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Species Specificity, Terminology as Topic, Vitamin K 2/metabolismMetabolism
Phylogeny20081024Aeromicrobium halocynthiae sp. nov., a taurocholic acid-producing bacterium isolated from the marine ascidian Halocynthia roretzi.Kim SH, Yang HO, Sohn YC, Kwon HCInt J Syst Evol Microbiol10.1099/ijs.0.016618-02010Actinomycetales/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Taurocholic Acid/*biosynthesis, Urochordata/*microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny30556801Aeromicrobium lacus sp. nov., a novel actinobacterium isolated from a drinking-water reservoir.Sun Y, Liu WH, Ai MJ, Su J, Yu LY, Zhang YQInt J Syst Evol Microbiol10.1099/ijsem.0.0031812018Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Drinking Water/*microbiology, Fatty Acids/chemistry, Lakes/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7950Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19178)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19178
19776Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM19178.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32492Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2871228776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80314Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397644.1StrainInfo: A central database for resolving microbial strain identifiers