Strain identifier

BacDive ID: 11048

Type strain: Yes

Species: Rhodococcus artemisiae

Strain history: <- S.-K. Tang, Yunnan Univ., Kunming; YIM 65754 <- J. Li, Yunnan Univ., Kunming

NCBI tax ID(s): 714159 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16418

BacDive-ID: 11048

DSM-Number: 45380

keywords: 16S sequence, aerobe, mesophilic, Gram-positive, ovoid-shaped

description: Rhodococcus artemisiae DSM 45380 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from surface-sterilized stem of Artemisia annua L..

NCBI tax id

  • NCBI tax id: 714159
  • Matching level: species

strain history

  • @ref: 16418
  • history: <- S.-K. Tang, Yunnan Univ., Kunming; YIM 65754 <- J. Li, Yunnan Univ., Kunming

doi: 10.13145/bacdive11048.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • genus: Rhodococcus
  • species: Rhodococcus artemisiae
  • full scientific name: Rhodococcus artemisiae Zhao et al. 2012

@ref: 16418

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus artemisiae

full scientific name: Rhodococcus artemisiae Zhao et al. 2012

type strain: yes

Morphology

cell morphology

  • @ref: 30260
  • gram stain: positive
  • cell shape: ovoid-shaped
  • motility: no

colony morphology

@refcolony colormedium used
69390Beige (1001)ISP 2
69390Beige (1001)ISP 6
69390Ivory (1014)suter with tyrosine
69390Light ivory (1015)ISP 4
69390Light ivory (1015)ISP 7
69390Light ivory (1015)suter without tyrosine
69390Oyster white (1013)ISP 3
69390Oyster white (1013)ISP 5

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69390noAerial myceliumISP 2
69390noAerial myceliumISP 3
69390noAerial myceliumISP 4
69390noAerial myceliumISP 5
69390noAerial myceliumISP 6
69390noAerial myceliumISP 7
69390noAerial myceliumsuter with tyrosine
69390noAerial myceliumsuter without tyrosine

pigmentation

@refproductionname
30260yes
69390noMelanin
69390nosoluble pigment

multimedia

@refmultimedia contentcaptionintellectual property rights
69390DSM_45380_image3.jpegPlates (535, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69390DSM_45380_image4.jpegPlates (535, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16418TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
16418GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16418positivegrowth28mesophilic
30260positivegrowth10-40
30260positiveoptimum20-37

culture pH

@refabilitytypepHPH range
30260positivegrowth06-09alkaliphile
30260positiveoptimum07-08

Physiology and metabolism

oxygen tolerance

  • @ref: 30260
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
30260NaClpositivegrowth0-7 %
69390NaClpositivegrowth0-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3026022599arabinose+carbon source
3026017057cellobiose+carbon source
3026028757fructose+carbon source
3026028260galactose+carbon source
3026017234glucose+carbon source
3026017754glycerol+carbon source
3026017306maltose+carbon source
3026029864mannitol+carbon source
3026037684mannose+carbon source
3026026546rhamnose+carbon source
3026033942ribose+carbon source
3026030911sorbitol+carbon source
3026017992sucrose+carbon source
3026053424tween 20+carbon source
3026053423tween 40+carbon source
3026018222xylose+carbon source
6939022599arabinose-growth
6939062968cellulose-growth
6939028757fructose+growth
6939017234glucose+growth
6939017268inositol-growth
6939037684mannose+growth
6939016634raffinose-growth
6939026546rhamnose-growth
6939017992sucrose-growth
6939018222xylose-growth
6837917632nitrate+reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
30260catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382esterase lipase (C 8)+
68382leucine arylamidase+3.4.11.1
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69390+--+---------------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69390+/-+/-++/-++/-+/-+/--++----+---

Isolation, sampling and environmental information

isolation

  • @ref: 16418
  • sample type: surface-sterilized stem of Artemisia annua L.
  • host species: Artemisia annua
  • geographic location: Yunnan province
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Stem (Branch)
#Host Body-Site#Plant#Sterilized plant part

Safety information

risk assessment

  • @ref: 16418
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16418
  • description: Rhodococcus artemisiae strain YIM 65754 16S ribosomal RNA gene, partial sequence
  • accession: GU367155
  • length: 1516
  • database: ena
  • NCBI tax ID: 714159

GC content

@refGC-contentmethod
1641866.2high performance liquid chromatography (HPLC)
3026066.2

External links

@ref: 16418

culture collection no.: DSM 45380, CCTCC AA 209042, YIM 65754

straininfo link

  • @ref: 80298
  • straininfo: 398962

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21642485Rhodococcus artemisiae sp. nov., an endophytic actinobacterium isolated from the pharmaceutical plant Artemisia annua L.Zhao GZ, Li J, Zhu WY, Tian SZ, Zhao LX, Yang LL, Xu LH, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.031930-02011Artemisia annua/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Endophytes/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, Plants, Medicinal/microbiology, RNA, Ribosomal, 16S/genetics, Rhodococcus/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryEnzymology
Phylogeny26310241Rhodococcus lactis sp. nov., an actinobacterium isolated from sludge of a dairy waste treatment plant.Singh PK, Kumari A, Chawla N, Pinnaka AK, Korpole SInt J Syst Evol Microbiol10.1099/ijsem.0.0005652015Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, *Dairying, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, India, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodococcus/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Sewage/*microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16418Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45380)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45380
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30260Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2660128776041
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69390Wink, J.https://cdn.dsmz.de/wink/DSM%2045380.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
80298Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID398962.1StrainInfo: A central database for resolving microbial strain identifiers