Strain identifier

BacDive ID: 11035

Type strain: Yes

Species: Rhodococcus aetherivorans

Strain Designation: 10BC-312

Strain history: CIP <- 2004, NCIMB <- M. Goodfellow, UK: strain 10BC-312 <- J. Salanitro, USA

NCBI tax ID(s): 191292 (species)

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General

@ref: 12061

BacDive-ID: 11035

DSM-Number: 44752

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped

description: Rhodococcus aetherivorans 10BC-312 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from activated sludge.

NCBI tax id

  • NCBI tax id: 191292
  • Matching level: species

strain history

@refhistory
12061<- M. Goodfellow; 10BC-312 <- J. Salanitro
67770NCIMB 13964 <-- M. Goodfellow 10bc-312.
116099CIP <- 2004, NCIMB <- M. Goodfellow, UK: strain 10BC-312 <- J. Salanitro, USA

doi: 10.13145/bacdive11035.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Rhodococcus
  • species: Rhodococcus aetherivorans
  • full scientific name: Rhodococcus aetherivorans Goodfellow et al. 2004

@ref: 12061

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus aetherivorans

full scientific name: Rhodococcus aetherivorans Goodfellow et al. 2004

strain designation: 10BC-312

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
116099positiverod-shapedno
125438no92
125439positive97.7

colony morphology

@refcolony colorincubation periodmedium used
19702Pastel orange10-14 daysISP 2
19702Beige10-14 daysISP 3
19702Beige10-14 daysISP 4
19702Beige10-14 daysISP 5
19702Pastel yellow10-14 daysISP 6
19702Pastel yellow10-14 daysISP 7
116099

multicellular morphology

@refforms multicellular complexmedium name
19702noISP 2
19702noISP 3
19702noISP 4
19702noISP 5
19702noISP 6
19702noISP 7

multimedia

  • @ref: 12061
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44752.jpg
  • caption: Medium 535 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12061TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
12061GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19702ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19702ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19702ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19702ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19702ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19702ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
36731MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulumyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
116099CIP Medium 57yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=57

culture temp

@refgrowthtypetemperature
12061positivegrowth28
19702positiveoptimum28
36731positivegrowth30
67770positivegrowth28
116099positivegrowth25-41
116099nogrowth10
116099nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
125438aerobe91.525
125439obligate aerobe93.7

halophily

@refsaltgrowthtested relationconcentration
116099NaClpositivegrowth0-2 %
116099NaClnogrowth4 %
116099NaClnogrowth6 %
116099NaClnogrowth8 %
116099NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: MK-8(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1970217234glucose+
1970222599arabinose-
1970217992sucrose+
1970218222xylose-
1970217268myo-inositol-
1970229864mannitol+
1970228757fructose+
1970226546rhamnose-
1970216634raffinose-
1970262968cellulose-
6837917992sucrose+fermentation
683795291gelatin-hydrolysis
6837916199urea-hydrolysis
683794853esculin-hydrolysis
11609916947citrate+carbon source
1160994853esculin-hydrolysis
116099606565hippurate-hydrolysis
11609917632nitrate+reduction
11609916301nitrite-reduction
11609917632nitrate-respiration
68371Potassium 5-ketogluconate+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol+builds acid from
6837116899D-mannitol+builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose+builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
6836925115malate+assimilation
6836927689decanoate-assimilation
6836916899D-mannitol+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11609935581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
11609915688acetoin-
11609917234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382alpha-chymotrypsin-3.4.21.1
68382leucine arylamidase+3.4.11.1
68382esterase lipase (C 8)-
68382lipase (C 14)-
116099oxidase-
116099beta-galactosidase-3.2.1.23
116099alcohol dehydrogenase-1.1.1.1
116099gelatinase+/-
116099amylase-
116099DNase-
116099caseinase-3.4.21.50
116099catalase+1.11.1.6
116099tween esterase+
116099gamma-glutamyltransferase-2.3.2.2
116099lecithinase-
116099lipase-
116099lysine decarboxylase-4.1.1.18
116099ornithine decarboxylase-4.1.1.17
116099phenylalanine ammonia-lyase+4.3.1.24
116099protease-
116099tryptophan deaminase-
116099urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379alkaline phosphatase-3.1.3.1
68369urease-3.5.1.5
68382alpha-mannosidase-3.2.1.24
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucuronidase-3.2.1.31
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369arginine dihydrolase-3.5.3.6

API coryne

@refPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELSAC
19702-+--------+

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- FucosidaseControl
19702----+++--------+---
12061+---++/-+/--------+-----
116099++--++-+-++---+-----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
12061+-------++/-+/-++/-+/-+/--+/-+++/-

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116099----------++-----++--------------+--------------+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
12061activated sludgeUSAUSANorth America
67770Petrochemical biotreater sludge in Deer ParkUSAUSANorth AmericaTX
116099Environment, Activated sludgeUnited States of AmericaUSANorth America

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Waste
  • Cat3: #Activated sludge

taxonmaps

  • @ref: 69479
  • File name: preview.99_2826.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_14;97_1792;98_2191;99_2826&stattab=map
  • Last taxonomy: Rhodococcus
  • 16S sequence: KF410364
  • Sequence Identity:
  • Total samples: 3141
  • soil counts: 1219
  • aquatic counts: 725
  • animal counts: 950
  • plant counts: 247

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
120611Risk group (German classification)
197021Risk group (German classification)
1160991Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Rhodococcus aetherivorans strain DSM 44752 16S ribosomal RNA gene, partial sequenceKF4103641370nuccore191292
12061Rhodococcus aetherovorans strain 10bc312 16S ribosomal RNA gene, partial sequenceAF4473911409nuccore191292

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Rhodococcus aetherivorans JCM 14343GCA_009176285scaffoldncbi191292
66792Rhodococcus aetherivorans strain DSM 44752191292.32wgspatric191292
66792Rhodococcus aetherivorans strain JCM 14343191292.30wgspatric191292
67770Rhodococcus aetherivorans DSM 44752GCA_011058165scaffoldncbi191292

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes89.941no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.085no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes91.525no
125438spore-formingspore-formingAbility to form endo- or exosporesno54.659no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno97.4yes
125438motile2+flagellatedAbility to perform flagellated movementno92no
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes56.4
125439BacteriaNetmotilityAbility to perform movementno78.5
125439BacteriaNetgram_stainReaction to gram-stainingpositive97.7
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe93.7

External links

@ref: 12061

culture collection no.: DSM 44752, NCIMB 13964, JCM 14343, CIP 108427

straininfo link

  • @ref: 80288
  • straininfo: 132799

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15053322Rhodococcus aetherivorans sp. nov., a new species that contains methyl t-butyl ether-degrading actinomycetes.Goodfellow M, Jones AL, Maldonado LA, Salanitro JSyst Appl Microbiol10.1078/0723-2020-002542004Base Sequence, DNA, Bacterial/chemistry/genetics, Methyl Ethers/*metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/chemistry/genetics, Rhodococcus/*classification/genetics/metabolism/physiology, Sequence Alignment, Sequence Analysis, DNA, Sewage/*microbiologyMetabolism
Phylogeny19688376Morphological, physiological, and molecular characterization of a newly isolated steroid-degrading actinomycete, identified as rhodococcus ruber strain Chol-4.Fernandez de Las Heras L, Garcia Fernandez E, Maria Navarro Llorens J, Perera J, Drzyzga OCurr Microbiol10.1007/s00284-009-9474-z2009Bacterial Typing Techniques, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodococcus/classification/*genetics/*isolation & purification/metabolism, Sewage/*microbiology, Steroids/*metabolismGenetics
Metabolism276238201,4-Dioxane degradation potential of members of the genera Pseudonocardia and Rhodococcus.Inoue D, Tsunoda T, Sawada K, Yamamoto N, Saito Y, Sei K, Ike MBiodegradation10.1007/s10532-016-9772-72016Actinomycetales/*metabolism, Biodegradation, Environmental, Dioxanes/*metabolism, Furans/metabolism, Rhodococcus/*metabolism
Metabolism296964491,4-Dioxane degradation characteristics of Rhodococcus aetherivorans JCM 14343.Inoue D, Tsunoda T, Yamamoto N, Ike M, Sei KBiodegradation10.1007/s10532-018-9832-22018Biodegradation, Environmental/drug effects, Dioxanes/*metabolism, Ethers, Cyclic/pharmacology, Ethylene Glycol/pharmacology, Hydrogen-Ion Concentration, Kinetics, Rhodococcus/enzymology/growth & development/*metabolism, TemperatureEnzymology
Phylogeny29957174Rhodococcus electrodiphilus sp. nov., a marine electro active actinobacterium isolated from coral reef.Ramaprasad EVV, Mahidhara G, Sasikala C, Ramana CVInt J Syst Evol Microbiol10.1099/ijsem.0.0028952018Bacterial Typing Techniques, Base Composition, *Coral Reefs, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, India, Mycolic Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodococcus/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Metabolism31446278Stimulatory and inhibitory effects of metals on 1,4-dioxane degradation by four different 1,4-dioxane-degrading bacteria.Inoue D, Tsunoda T, Sawada K, Yamamoto N, Sei K, Ike MChemosphere10.1016/j.chemosphere.2019.1246062019Bacteria, Aerobic/metabolism, *Biodegradation, Environmental, Dioxanes/*metabolism, Metals/*metabolism, Mixed Function Oxygenases/metabolism, Mycobacterium/*metabolism, Rhodococcus/*metabolism
Genetics31948959Draft Genome Sequence of Rhodococcus aetherivorans JCM 14343(T), a Bacterium Capable of Degrading Recalcitrant Noncyclic and Cyclic Ethers.Inoue D, Nakazawa M, Yamamoto N, Sei K, Ike MMicrobiol Resour Announc10.1128/MRA.01345-192020

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
12061Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44752)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44752
19702Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM44752.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36731Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6048
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68371Automatically annotated from API 50CH acid
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80288Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID132799.1StrainInfo: A central database for resolving microbial strain identifiers
116099Curators of the CIPCollection of Institut Pasteur (CIP 108427)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108427
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1