Archive BacDiveID:10.13145/bacdive11031.20221219.7.1

Strain identifier

BacDive ID: 11031

Type strain:

Species: Rhodococcus maanshanensis

Strain Designation: M712

Strain history: Z. Liu M712.

NCBI tax ID(s): 1219019 (strain), 183556 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 11972

BacDive-ID: 11031

DSM-Number: 44675

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Rhodococcus maanshanensis M712 is a mesophilic bacterium that was isolated from soil sample.

NCBI tax id

NCBI tax id	Matching level
1219019	strain
183556	species

strain history

doi: 10.13145/bacdive11031.20221219.7.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Mycobacteriales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus maanshanensis
full scientific name: Rhodococcus maanshanensis Zhang et al. 2002

@ref: 11972

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus maanshanensis

full scientific name: Rhodococcus maanshanensis Zhang et al. 2002 emend. Nouioui et al. 2018

strain designation: M712

type strain: yes

Morphology

cell morphology

@ref: 69480
gram stain: positive
confidence: 98.022

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
11972	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	yes	https://mediadive.dsmz.de/medium/535	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
33168	MEDIUM 72- for trypto casein soja agar	yes		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@ref	growth	type	temperature	range
11972	positive	growth	28	mesophilic
33168	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

spore formation

@ref: 69480
spore formation: no
confidence: 73.785

halophily

@ref: 69480
halophily level: non-halophilic
confidence: 90.818

observation

@ref: 67770
observation: quinones: MK-8(H₂)

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
11972	soil sample	Anhui Province, Maanshan Mountain	China	CHN	Asia
67770	Soil	Maanshan Mountain, Anhui Province	China	CHN	Asia

isolation source categories

Cat1: #Environmental
Cat2: #Terrestrial
Cat3: #Soil

taxonmaps

@ref: 69479
File name: preview.99_3263.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_181;97_445;98_2500;99_3263&stattab=map
Last taxonomy: Rhodococcus
16S sequence: KF410342
Sequence Identity:
Total samples: 4647
soil counts: 2840
aquatic counts: 421
animal counts: 242
plant counts: 1144

Safety information

risk assessment

@ref: 11972
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Rhodococcus maanshanensis strain DSM 44675 16S ribosomal RNA gene, partial sequence	KF410342	1369	ena	183556
11972	Rhodococcus maanshanensis 16S ribosomal RNA gene, partial sequence	AF416566	1411	ena	183556

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Rhodococcus maanshanensis NBRC 100610	1219019.3	wgs	patric	1219019
66792	Rhodococcus maanshanensis strain DSM 44675	183556.3	wgs	patric	183556
66792	Rhodococcus maanshanensis DSM 44675	2675903023	draft	img	183556
67770	Rhodococcus maanshanensis NBRC 100610 NBRC 100610	GCA_001894865	contig	ncbi	1219019
67770	Rhodococcus maanshanensis DSM 44675	GCA_900109405	contig	ncbi	183556
66792	Streptococcus pneumoniae SMRU1960	GCA_001087605	scaffold	patric	1313
66792	Escherichia coli NILS78:B2 /STw 95 /STp 1 / O1:H7	GCA_946909915	contig	patric	562

GC content

@ref	GC-content	method
11972	66.2
67770	69.2	genome sequence analysis
67770	66.2	thermal denaturation, midpoint method (Tm)

External links

@ref: 11972

culture collection no.: DSM 44675, AS 4.1720, CIP 107806, JCM 11374, BCRC 16384, CGMCC 4.1720, KCTC 9961, NBRC 100610

straininfo link

@ref	passport
20218	http://www.straininfo.net/strains/303660
20218	http://www.straininfo.net/strains/303657
20218	http://www.straininfo.net/strains/337094
20218	http://www.straininfo.net/strains/303658

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	12508878	Rhodococcus maanshanensis sp. nov., a novel actinomycete from soil.	Zhang J, Zhang Y, Xiao C, Liu Z, Goodfellow M	Int J Syst Evol Microbiol	10.1099/00207713-52-6-2121	2002	Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Microscopy, Electron, Scanning, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodococcus/*classification/genetics/isolation & purification/metabolism, Soil Microbiology	Genetics
Metabolism	28188209	Novel Three-Component Phenazine-1-Carboxylic Acid 1,2-Dioxygenase in Sphingomonas wittichii DP58.	Zhao Q, Hu HB, Wang W, Huang XQ, Zhang XH	Appl Environ Microbiol	10.1128/AEM.00133-17	2017	Dioxygenases/genetics/metabolism, Escherichia coli/genetics/metabolism, Gene Expression, Gene Expression Profiling, Multienzyme Complexes/genetics/metabolism, Phenazines/metabolism, Pseudomonas putida/genetics/metabolism, Recombinant Proteins/genetics/isolation & purification/metabolism, Sequence Homology, Amino Acid, Sphingomonas/*enzymology/genetics/isolation & purification	Enzymology
Phylogeny	30467662	Rhodococcus daqingensis sp. nov., isolated from petroleum-contaminated soil.	Wang L, Zhang L, Zhang X, Zhang S, Yang L, Yuan H, Chen J, Liang C, Huang W, Liu J, Zhao Y, Yang Q	Antonie Van Leeuwenhoek	10.1007/s10482-018-1201-y	2018	Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Petroleum/analysis/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodococcus/classification/genetics/isolation & purification/metabolism, Soil/chemistry, *Soil Microbiology	Metabolism
Phylogeny	32375931	Rhodococcus oryzae sp. nov., a novel actinobacterium isolated from rhizosphere soil of rice (Oryza sativa L.).	Li C, Cao P, Jiang M, Hou Y, Du C, Xiang W, Zhao J, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.004171	2020	Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Oryza/microbiology, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Rhodococcus/classification/isolation & purification, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry	Transcriptome

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
11972	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44675)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-44675
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
33168	Curators of the CIP		https://brclims.pasteur.fr/brcWeb/souche/detail/1/5281
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)