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Strain identifier

BacDive ID: 11031

Type strain: Yes

Species: Rhodococcus maanshanensis

Strain Designation: M712

Strain history: Z. Liu M712.

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 11972

BacDive-ID: 11031

DSM-Number: 44675

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Rhodococcus maanshanensis M712 is a mesophilic bacterium that was isolated from soil sample.

NCBI tax id

NCBI tax idMatching level
1219019strain
183556species

strain history

doi: 10.13145/bacdive11031.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Rhodococcus
  • species: Rhodococcus maanshanensis
  • full scientific name: Rhodococcus maanshanensis Zhang et al. 2002

@ref: 11972

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus maanshanensis

full scientific name: Rhodococcus maanshanensis Zhang et al. 2002 emend. Nouioui et al. 2018

strain designation: M712

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 98.022

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11972TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
33168MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
11972positivegrowth28mesophilic
33168positivegrowth30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 73.785

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 90.818

observation

  • @ref: 67770
  • observation: quinones: MK-8(H2)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
11972soil sampleAnhui Province, Maanshan MountainChinaCHNAsia
67770SoilMaanshan Mountain, Anhui ProvinceChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_3263.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_181;97_445;98_2500;99_3263&stattab=map
  • Last taxonomy: Rhodococcus
  • 16S sequence: KF410342
  • Sequence Identity:
  • Total samples: 4647
  • soil counts: 2840
  • aquatic counts: 421
  • animal counts: 242
  • plant counts: 1144

Safety information

risk assessment

  • @ref: 11972
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Rhodococcus maanshanensis strain DSM 44675 16S ribosomal RNA gene, partial sequenceKF4103421369ena183556
11972Rhodococcus maanshanensis 16S ribosomal RNA gene, partial sequenceAF4165661411ena183556

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Rhodococcus maanshanensis NBRC 1006101219019.3wgspatric1219019
66792Rhodococcus maanshanensis strain DSM 44675183556.3wgspatric183556
66792Rhodococcus maanshanensis DSM 446752675903023draftimg183556
67770Rhodococcus maanshanensis NBRC 100610 NBRC 100610GCA_001894865contigncbi1219019
67770Rhodococcus maanshanensis DSM 44675GCA_900109405contigncbi183556
66792Streptococcus pneumoniae SMRU1960GCA_001087605scaffoldpatric1313
66792Escherichia coli NILS78:B2 /STw 95 /STp 1 / O1:H7GCA_946909915contigpatric562

GC content

@refGC-contentmethod
1197266.2
6777069.2genome sequence analysis
6777066.2thermal denaturation, midpoint method (Tm)

External links

@ref: 11972

culture collection no.: DSM 44675, AS 4.1720, CIP 107806, JCM 11374, BCRC 16384, CGMCC 4.1720, KCTC 9961, NBRC 100610

straininfo link

@refpassport
20218http://www.straininfo.net/strains/303660
20218http://www.straininfo.net/strains/303657
20218http://www.straininfo.net/strains/337094
20218http://www.straininfo.net/strains/303658

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12508878Rhodococcus maanshanensis sp. nov., a novel actinomycete from soil.Zhang J, Zhang Y, Xiao C, Liu Z, Goodfellow MInt J Syst Evol Microbiol10.1099/00207713-52-6-21212002Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Microscopy, Electron, Scanning, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodococcus/*classification/genetics/isolation & purification/metabolism, Soil MicrobiologyGenetics
Metabolism28188209Novel Three-Component Phenazine-1-Carboxylic Acid 1,2-Dioxygenase in Sphingomonas wittichii DP58.Zhao Q, Hu HB, Wang W, Huang XQ, Zhang XHAppl Environ Microbiol10.1128/AEM.00133-172017Dioxygenases/genetics/*metabolism, Escherichia coli/genetics/metabolism, Gene Expression, Gene Expression Profiling, Multienzyme Complexes/genetics/metabolism, Phenazines/metabolism, Pseudomonas putida/genetics/metabolism, Recombinant Proteins/genetics/isolation & purification/*metabolism, Sequence Homology, Amino Acid, Sphingomonas/*enzymology/genetics/isolation & purificationEnzymology
Phylogeny30467662Rhodococcus daqingensis sp. nov., isolated from petroleum-contaminated soil.Wang L, Zhang L, Zhang X, Zhang S, Yang L, Yuan H, Chen J, Liang C, Huang W, Liu J, Zhao Y, Yang QAntonie Van Leeuwenhoek10.1007/s10482-018-1201-y2018Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Petroleum/*analysis/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodococcus/classification/genetics/*isolation & purification/metabolism, Soil/chemistry, *Soil MicrobiologyMetabolism
Phylogeny32375931Rhodococcus oryzae sp. nov., a novel actinobacterium isolated from rhizosphere soil of rice (Oryza sativa L.).Li C, Cao P, Jiang M, Hou Y, Du C, Xiang W, Zhao J, Wang XInt J Syst Evol Microbiol10.1099/ijsem.0.0041712020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Oryza/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Rhodococcus/*classification/isolation & purification, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11972Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44675)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44675
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33168Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5281
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)