Strain identifier

BacDive ID: 11

Type strain: Yes

Species: Acetobacter pomorum

Strain history: CIP <- 1998, G. Schüller, Hohenheim Univ., Stuttgart, Germany: strain LTH 2458

NCBI tax ID(s): 1307917 (strain), 65959 (species)

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General

@ref: 4505

BacDive-ID: 11

DSM-Number: 11825

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, colony-forming

description: Acetobacter pomorum DSM 11825 is an aerobe, mesophilic bacterium that forms circular colonies and was isolated from industrial cider vinegar fermentation.

NCBI tax id

NCBI tax idMatching level
65959species
1307917strain

strain history

@refhistory
4505<- S. J. Sokollek and W. P. Hammes
328371998, G. Schüller, Univ. Hohenheim, Stuttgart, Germany: strain LTH 2458
121936CIP <- 1998, G. Schüller, Hohenheim Univ., Stuttgart, Germany: strain LTH 2458

doi: 10.13145/bacdive11.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter pomorum
  • full scientific name: Acetobacter pomorum Sokollek et al. 1998

@ref: 4505

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter pomorum

full scientific name: Acetobacter pomorum Sokollek et al. 1998

type strain: yes

Morphology

cell morphology

@refcell lengthcell widthmotilitygram staincell shape
232321.3-1.6 µm0.8-1.2 µmno
121936nonegativerod-shaped

colony morphology

  • @ref: 23232
  • colony size: 0.8-1.5 mm
  • colony color: beige
  • colony shape: circular
  • medium used: RAE agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4505SABOURAND GLUCOSE MEDIUM (DSMZ Medium 1429)yeshttps://mediadive.dsmz.de/medium/1429Name: SABOURAUD GLUCOSE MEDIUM (DSMZ Medium 1429) Composition: SABOURAUD- Glucose-Bouillon 30.0 g/l Agar 15.0 g/l Distilled water
4505RAE MEDIUM (DSMZ Medium 848)yeshttps://mediadive.dsmz.de/medium/848Name: RAE MEDIUM (DSMZ Medium 848) Composition: Glucose 40.0 g/l Yeast extract 10.0 g/l Peptone 10.0 g/l Na2HPO4 x 2 H2O 3.38 g/l Citric acid x H2O 1.5 g/l Glacial acetic acid Absolute ethanol Distilled water
23232AE brothyes3% (v/v) ethanol and 0, 1, 2, 3, 4, 5, 6, 7 and 8% (w/v) acetic acid
23232RAE agaryes
32837MEDIUM 289 - for Acetobacter intermediusyesDistilled water make up to (940.000 ml);Agar (8.000 g);Glucose (7.500 g);Yeast extract (3.000 g);Peptone (4.000 g);Acetic acid (30.000 ml);Ethanol (30.000 ml)
121936CIP Medium 289yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=289

culture temp

@refgrowthtypetemperaturerange
4505positivegrowth30mesophilic
23232positivegrowth30mesophilic
32837positivegrowth30mesophilic
121936positivegrowth22-37
121936nogrowth10psychrophilic
121936nogrowth41thermophilic
121936nogrowth45thermophilic

culture pH

  • @ref: 23232
  • ability: no
  • type: growth
  • pH: 2.5

Physiology and metabolism

tolerance

@refcompoundpercentage
23232Ethanol
23232Lactate
23232D-Glucose30

oxygen tolerance

@refoxygen tolerance
23232aerobe
121936obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
121936NaClpositivegrowth0 %
121936NaClnogrowth2 %
121936NaClnogrowth4 %
121936NaClnogrowth6 %
121936NaClnogrowth8 %
121936NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2323230089acetate-growth
232328391D-gluconate-growth
2323224996lactate-growth
2323217992sucrose-growth
23232168082-dehydro-D-gluconate-
2323215824D-fructose+growth
2323217634D-glucose+growth
2323216899D-mannitol+growth
2323216988D-ribose+growth
2323265327D-xylose+growth
2323216236ethanol+growth
2323217754glycerol+growth
2323217306maltose+growth
2323217790methanol+growth
2323228831propanol+growth
2323230911sorbitol+growth
2323216016dihydroxyacetone+
121936606565hippurate-hydrolysis
12193617632nitrate-reduction
12193616301nitrite-reduction

antibiotic resistance

  • @ref: 121936
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproductionexcretion
23232168082-dehydro-D-gluconatenono
2323262968celluloseno
2323216016dihydroxyacetoneyes

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
121936oxidase-
121936beta-galactosidase-3.2.1.23
121936gelatinase-
121936catalase+1.11.1.6
121936gamma-glutamyltransferase-2.3.2.2

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121936--++-------+--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperatureisolation date
4505industrial cider vinegar fermentationsouthern GermanyGermanyDEUEurope
23232YPMyeast extract, 5 g; peptone, 3 g; and mannitol, 25 g10 days30
121936Food, Apple vinegarSouthernGermanyDEUEurope1998

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Engineered#Industrial
#Engineered#Food production#Beverage

taxonmaps

  • @ref: 69479
  • File name: preview.99_214.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_163;98_182;99_214&stattab=map
  • Last taxonomy: Acetobacter
  • 16S sequence: JF793971
  • Sequence Identity:
  • Total samples: 12367
  • soil counts: 1742
  • aquatic counts: 1945
  • animal counts: 7743
  • plant counts: 937

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
45051Risk group (German classification)
1219361Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acetobacter pomorum strain DSM 11825 16S ribosomal RNA gene, partial sequenceJF7939711351ena65959
4505Acetobacter pomorum 16S ribosomal RNA geneAJ0016321491ena65959

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter pomorum strain DSM 1182565959.23wgspatric65959
66792Acetobacter pomorum DSM 118252828617574draftimg65959

GC content

@refGC-contentmethod
450550.5thermal denaturation, midpoint method (Tm)
2323250.50thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno96.892no
anaerobicno97.989yes
halophileno93.393no
spore-formingno94.576no
glucose-utilyes73.197no
thermophileno96.15yes
flagellatedno85.703yes
motileyes70.379no
aerobicyes87.247yes
glucose-fermentno90.189no

External links

@ref: 4505

culture collection no.: DSM 11825, LTH 2458, CIP 105762

straininfo link

  • @ref: 69695
  • straininfo: 12783

literature

  • topic: Phylogeny
  • Pubmed-ID: 9734049
  • title: Description of Acetobacter oboediens sp. nov. and Acetobacter pomorum sp. nov., two new species isolated from industrial vinegar fermentations.
  • authors: Sokollek SJ, Hertel C, Hammes WP
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-48-3-935
  • year: 1998
  • mesh: *Acetic Acid, Acetobacter/*classification, Base Sequence, DNA, Bacterial/analysis, DNA, Ribosomal/chemistry, *Fermentation, Molecular Sequence Data, Oligonucleotide Probes, RNA, Ribosomal, 16S/genetics
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4505Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11825)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11825
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23232Stephan J. Sokollek,Christian Hertel, Walter P. Hammes10.1099/00207713-48-3-935Description of Acetobacter oboediens sp. nov. and Acetobacter pomorum sp. nov., two new species isolated from industrial vinegar fermentationsIJSEM 48: 935-940 19989734049
32837Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17817
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69695Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID12783.1StrainInfo: A central database for resolving microbial strain identifiers
121936Curators of the CIPCollection of Institut Pasteur (CIP 105762)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105762