Strain identifier

BacDive ID: 10948

Type strain: No

Species: Rhodococcus sp.

Strain Designation: H8, SM1788

Strain history: <- K. Faber, Univ. Graz; H8 <- C. Syldatk, IBVT, Univ. Stuttgart <- J. A. M. de Bont, Univ. Wageningen

NCBI tax ID(s): 194249 (species)

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General

@ref: 11847

BacDive-ID: 10948

DSM-Number: 44541

keywords: Bacteria, mesophilic

description: Rhodococcus sp. H8 is a mesophilic bacterium that was isolated from water sample from river Rhine.

NCBI tax id

  • NCBI tax id: 194249
  • Matching level: species

strain history

  • @ref: 11847
  • history: <- K. Faber, Univ. Graz; H8 <- C. Syldatk, IBVT, Univ. Stuttgart <- J. A. M. de Bont, Univ. Wageningen

doi: 10.13145/bacdive10948.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Rhodococcus
  • species: Rhodococcus sp.
  • full scientific name: Rhodococcus Zopf 1891 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Rhodococcoides
    20215Prescottella
    20215Prescottia

@ref: 11847

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus sp.

full scientific name: Rhodococcus sp.

strain designation: H8, SM1788

type strain: no

Culture and growth conditions

culture medium

  • @ref: 11847
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 11847
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837928087glycogen-fermentation
6837917992sucrose-fermentation
6837917716lactose-fermentation
6837917306maltose-fermentation
6837916899D-mannitol-fermentation
6837965327D-xylose-fermentation
6837916988D-ribose-fermentation
6837917634D-glucose-fermentation
683795291gelatin-hydrolysis
6837916199urea-hydrolysis
683794853esculin-hydrolysis
6837917632nitrate+reduction

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379beta-galactosidase-3.2.1.23
68379alkaline phosphatase-3.1.3.1
68382naphthol-AS-BI-phosphohydrolase-
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379beta-glucuronidase-3.2.1.31
68379pyrrolidonyl arylamidase+3.4.19.3

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYG
11847++/-+---+/--------------

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
11847-----++/-+/--------++/----

Isolation, sampling and environmental information

isolation

  • @ref: 11847
  • sample type: water sample from river Rhine
  • country: Netherlands
  • origin.country: NLD
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #River (Creek)

Safety information

risk assessment

  • @ref: 11847
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

External links

@ref: 11847

culture collection no.: DSM 44541

straininfo link

  • @ref: 80202
  • straininfo: 50675

Reference

@idauthorscataloguedoi/urltitle
11847Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44541)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44541
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
80202Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50675.1StrainInfo: A central database for resolving microbial strain identifiers