Strain identifier

BacDive ID: 1091

Type strain: Yes

Species: Neobacillus niacini

Strain history: CIP <- 1995, DSM <- J.C. Ensign

NCBI tax ID(s): 1348654 (strain), 86668 (species)

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General

@ref: 1249

BacDive-ID: 1091

DSM-Number: 2923

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Neobacillus niacini DSM 2923 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

NCBI tax idMatching level
1348654strain
86668species

strain history

@refhistory
1249<- J.C. Ensign
67770DSM 2923 <-- J. C. Ensign.
121289CIP <- 1995, DSM <- J.C. Ensign

doi: 10.13145/bacdive1091.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Neobacillus
  • species: Neobacillus niacini
  • full scientific name: Neobacillus niacini (Nagel and Andreesen 1991) Patel and Gupta 2020

  • synonyms

    • @ref: 20215
    • synonym: Bacillus niacini

@ref: 1249

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Neobacillus

species: Neobacillus niacini

full scientific name: Neobacillus niacini (Nagel and Andreesen 1991) Patel and Gupta 2020

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1249CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
39059MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
121289CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
1249positivegrowth30mesophilic
39059positivegrowth30mesophilic
67770positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

@refsample type
1249soil
67770Soil
121289Environment, Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
12491Risk group (German classification)
1212891Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Bacillus niacini gene for 16S ribosomal RNAAB0211941526ena86668
20218Bacillus niacini gene for 16S rRNA, partial sequence, strain: NBRC 15566AB6809041475ena86668

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bacillus niacini DSM 292386668.4wgspatric86668
66792Bacillus niacini NBRC 155661348654.3wgspatric1348654
66792Bacillus niacini NBRC 155662675903663draftimg1348654
66792Bacillus niacini DSM 29232630968697draftimg86668
67770Neobacillus niacini NBRC 15566GCA_001591505contigncbi1348654
67770Neobacillus niacini DSM 2923GCA_000768265scaffoldncbi86668

GC content

  • @ref: 67770
  • GC-content: 37
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes84.945no
gram-positiveyes83.196no
anaerobicno96.696no
halophileno83.546no
spore-formingyes91.455no
thermophileno98.804yes
glucose-utilyes86.534no
aerobicyes69.961no
flagellatedyes77.354no
glucose-fermentno88.637no

External links

@ref: 1249

culture collection no.: DSM 2923, IFO 15566, NBRC 15566, JCM 12306, CGMCC 1.3663, CIP 104585, IAM 15261, KCTC 3562, LMG 16677, NCIMB 13159, NRRL B-23384

straininfo link

  • @ref: 70763
  • straininfo: 8359

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16738118Ornithinibacillus gen. nov., with the species Ornithinibacillus bavariensis sp. nov. and Ornithinibacillus californiensis sp. nov.Mayr R, Busse HJ, Worliczek HL, Ehling-Schulz M, Scherer SInt J Syst Evol Microbiol10.1099/ijs.0.64038-02006Catalase/metabolism, Fatty Acids/analysis, Gram-Positive Bacteria/*classification/*genetics/isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, Species SpecificityMetabolism
Phylogeny22611202Bacillus ginsengisoli sp. nov., isolated from soil of a ginseng field.Nguyen NL, Kim YJ, Hoang VA, Min JW, Liang ZQ, Yang DCInt J Syst Evol Microbiol10.1099/ijs.0.031740-02012Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Panax/*microbiology, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil MicrobiologyGenetics
Phylogeny24835163Thermotolerant Bacillus kokeshiiformis sp. nov. isolated from marine animal resources compost.Poudel P, Miyamoto H, Miyamoto H, Okugawa Y, Tashiro Y, Sakai KInt J Syst Evol Microbiol10.1099/ijs.0.059329-02014Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Fertilizers/microbiology, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seafood, Sequence Analysis, DNA, *Soil MicrobiologyGenetics
Genetics25477409Draft Genome Sequence of the Nicotinate-Metabolizing Soil Bacterium Bacillus niacini DSM 2923.Harvey ZH, Snider MJGenome Announc10.1128/genomeA.01251-142014
Phylogeny33625539Bacillus salipaludis sp. nov., isolated from saline-alkaline soil.Xue L, Tang L, Zhao J, Fang Z, Liu H, Qiao J, Zhang GArch Microbiol10.1007/s00203-021-02239-02021Bacillus/*classification/genetics/isolation & purification/*metabolism, Bacterial Typing Techniques, Base Composition/genetics, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil/chemistry, Soil Microbiology, WetlandsTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1249Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2923)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2923
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39059Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16509
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
70763Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID8359.1StrainInfo: A central database for resolving microbial strain identifiers
121289Curators of the CIPCollection of Institut Pasteur (CIP 104585)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104585