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Strain identifier

BacDive ID: 10894

Type strain: No

Species: Rhodococcus rhodnii

Strain Designation: A1, N 443

Strain history: <- M. Goodfellow, N 443 <- P. Hill, A1 (Nocardia rhodnii)

NCBI tax ID(s): 38312 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 10963

BacDive-ID: 10894

DSM-Number: 43337

keywords: 16S sequence, Bacteria, mesophilic

description: Rhodococcus rhodnii A1 is a mesophilic bacterium that was isolated from intestinal tract.

NCBI tax id

  • NCBI tax id: 38312
  • Matching level: species

strain history: <- M. Goodfellow, N 443 <- P. Hill, A1 (Nocardia rhodnii)

doi: 10.13145/bacdive10894.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Rhodococcus
  • species: Rhodococcus rhodnii
  • full scientific name: Rhodococcus rhodnii Goodfellow and Alderson 1979 (Approved Lists 1980)

@ref: 10963

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus rhodnii

full scientific name: Rhodococcus rhodnii Goodfellow and Alderson 1979 emend. Nouioui et al. 2018

strain designation: A1, N 443

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10963GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
41253MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
10963positivegrowth28mesophilic
41253positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 10963
  • sample type: intestinal tract

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Gastrointestinal tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_4925.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_14;97_1541;98_3688;99_4925&stattab=map
  • Last taxonomy: Rhodococcus rhodnii subclade
  • 16S sequence: X80622
  • Sequence Identity:
  • Total samples: 381
  • soil counts: 172
  • aquatic counts: 89
  • animal counts: 101
  • plant counts: 19

Safety information

risk assessment

  • @ref: 10963
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Rhodococcus rhodnii 16S rRNA gene, strain DSM43337T
  • accession: X80622
  • length: 1478
  • database: ena
  • NCBI tax ID: 38312

External links

@ref: 10963

culture collection no.: DSM 43337, CIP 104627

straininfo link

@refpassport
20218http://www.straininfo.net/strains/21220
20218http://www.straininfo.net/strains/154630

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10963Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43337)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43337
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41253Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16557
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta