Strain identifier

BacDive ID: 10886

Type strain: No

Species: Rhodococcus fascians

Strain Designation: N 1026

Strain history: <- M. Goodfellow, N 1026 (Rhodococcus luteus) <- N. A. Agre <- O. A. Nesterenko, IMV 29

NCBI tax ID(s): 1828 (species)

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General

@ref: 11435

BacDive-ID: 10886

DSM-Number: 43985

keywords: mesophilic, plant pathogen

description: Rhodococcus fascians N 1026 is a mesophilic plant pathogen that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1828
  • Matching level: species

strain history

  • @ref: 11435
  • history: <- M. Goodfellow, N 1026 (Rhodococcus luteus) <- N. A. Agre <- O. A. Nesterenko, IMV 29

doi: 10.13145/bacdive10886.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • genus: Rhodococcus
  • species: Rhodococcus fascians
  • full scientific name: Rhodococcus fascians (Tilford 1936) Goodfellow 1984

  • synonyms

    @refsynonym
    20215Corynebacterium fascians
    20215Rhodococcoides fascians
    20215Phytomonas fascians
    20215Rhodococcus luteus

@ref: 11435

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus fascians

full scientific name: Rhodococcus fascians (Tilford 1936) Goodfellow 1984 emend. Nouioui et al. 2018

strain designation: N 1026

type strain: no

Culture and growth conditions

culture medium

  • @ref: 11435
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 11435
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836916899D-mannitol+assimilation
6836930849L-arabinose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
11435-+-+/--++/-+--++/----+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
11435----+---+/-++/-++/-+/-+-+/-+++

Isolation, sampling and environmental information

isolation

  • @ref: 11435
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 11435
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

External links

@ref: 11435

culture collection no.: DSM 43985, IMV 29

straininfo link

  • @ref: 80141
  • straininfo: 50473

Reference

@idauthorscataloguedoi/urltitle
11435Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43985)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43985
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
80141Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50473.1StrainInfo: A central database for resolving microbial strain identifiers