Strain identifier

BacDive ID: 10866

Type strain: Yes

Species: Rhodococcus erythropolis

Strain Designation: A-0201, N11

Variant: Isotype of BacDive ID 10853

Strain history: CIP <- 1994, JCM <- KCC: strain A-0201 <- M. Goodfellow: strain N11 <- NCIB <- CCM, Nocardia erythropolis <- P.H.H. Gray: strain 05, Mycobacterium erythropolis

NCBI tax ID(s): 1219014 (strain), 1833 (species)

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General

@ref: 10729

BacDive-ID: 10866

DSM-Number: 43066

keywords: genome sequence, 16S sequence, obligate aerobe, mesophilic, human pathogen

description: Rhodococcus erythropolis A-0201 is an obligate aerobe, mesophilic human pathogen that was isolated from soil.

NCBI tax id

NCBI tax idMatching level
1833species
1219014strain

strain history

@refhistory
10729<- CCM (Nocardia erythropolis) <- P. H. Gray
67770KCC A-0201 <-- M. Goodfellow N11 <-- NCIB 9158 <-- CCM 277 <-- P. H. H. Gray 05.
119131CIP <- 1994, JCM <- KCC: strain A-0201 <- M. Goodfellow: strain N11 <- NCIB <- CCM, Nocardia erythropolis <- P.H.H. Gray: strain 05, Mycobacterium erythropolis

doi: 10.13145/bacdive10866.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • genus: Rhodococcus
  • species: Rhodococcus erythropolis
  • full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Mycobacterium erythropolis
    20215Rhodococcus qingshengii
    20215Rhodococcus baikonurensis
    20215Rhodococcus jialingiae
    20215Rhodococcus enclensis
    20215Rhodococcus degradans

@ref: 10729

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus erythropolis

full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 emend. Nouioui et al. 2018

strain designation: A-0201, N11

variant: Isotype of BacDive ID 10853

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no93.418
69480100positive
119131nopositiverod-shaped

colony morphology

@refcolony colorincubation periodmedium used
19935Salmon orange (2012)10-14 daysISP 2
1993510-14 daysISP 3
1993510-14 daysISP 4
19935Salmon orange (2012)10-14 daysISP 5
19935Salmon orange (2012)10-14 daysISP 6
19935Salmon orange (2012)10-14 daysISP 7
119131

multicellular morphology

@refforms multicellular complexmedium name
19935noISP 2
19935noISP 3
19935noISP 4
19935noISP 5
19935noISP 6
19935noISP 7

multimedia

@refmultimedia contentintellectual property rightscaption
10729https://www.dsmz.de/microorganisms/photos/DSM_43066-1.jpg© Leibniz-Institut DSMZ
10729https://www.dsmz.de/microorganisms/photos/DSM_43066.jpg© Leibniz-Institut DSMZMedium 535 28°C

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10729TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
10729GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19935ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19935ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
19935ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19935ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19935ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19935ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
34557MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
119131CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
119132CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
119132CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
19935positiveoptimum28mesophilic
10729positivegrowth28mesophilic
34557positivegrowth30mesophilic
67770positivegrowth28mesophilic
119131positivegrowth10-37
119131nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119131
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.074

compound production

@refcompound
10729steroids, 3-ketoDelta1,4
10729cholesterol oxidase
19935Chloramphenicol base

halophily

@refsaltgrowthtested relationconcentration
19935NaClpositivemaximum5 %
119131NaClpositivegrowth0-6 %
119131NaClnogrowth8 %
119131NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: MK-8(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1993562968cellulose+/-
1993516634raffinose+
1993526546rhamnose-
1993528757fructose+
1993529864mannitol+
1993517268myo-inositol+
1993518222xylose-
1993517992sucrose+
1993522599arabinose-
1993517234glucose+
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose-builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
6836817632nitrate-reduction
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose-fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
11913116947citrate-carbon source
1191314853esculin-hydrolysis
119131606565hippurate-hydrolysis
11913117632nitrate-reduction
11913116301nitrite-reduction
11913117632nitrate-respiration

antibiotic resistance

  • @ref: 119131
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteno
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno
11913135581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-
11913115688acetoin-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368beta-galactosidase-3.2.1.23
119131oxidase-
119131beta-galactosidase+3.2.1.23
119131alcohol dehydrogenase-1.1.1.1
119131amylase+
119131DNase-
119131caseinase-3.4.21.50
119131catalase+1.11.1.6
119131gamma-glutamyltransferase+2.3.2.2
119131lecithinase-
119131lysine decarboxylase-4.1.1.18
119131ornithine decarboxylase-4.1.1.17
119131phenylalanine ammonia-lyase-4.3.1.24
119131urease+3.5.1.5
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382alpha-chymotrypsin-3.4.21.1
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- FucosidaseControl
19935+++-++++-++---++---
10729--+/--+++/--------++----
119131++++++---++---++----

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARANO2N2
19935-++++-+----
10729------+---------------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119131-------------------------------------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119131++-+---+----------++-----------+++--+------------+---+-----++++++-------++-+---++--++---+-+-+++-++-

Isolation, sampling and environmental information

isolation

@refsample type
10729soil
67770Soil
119131Environment, Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
10729yes, in single cases1Risk group (German classification)
199351German classification
1191311Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Rhodococcus erythropolis strain ATCC 25544 16S ribosomal RNA gene, partial sequenceAY281110738ena1833
20218Rhodococcus erythropolis strain ATCC 25544 16S ribosomal RNA gene, partial sequenceGQ871829606ena1833
20218Rhodococcus erythropolis strain ATCC 4277 16S ribosomal RNA gene, partial sequenceAY281111966ena1833
20218R.erythropolis 16S rRNA gene (ATCC 4277T)X819291314ena1833
20218Rhodococcus erythropolis DSM43066T 16S ribosomal RNA gene, partial sequenceAF426150617ena1833
20218R.erythreus (DSM 43066) 16S rRNA geneX792891476ena1833
20218R.erythropolis 16s rRNA geneX766911367ena1833

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Rhodococcus erythropolis CGMCC 1.2362 (pRZP1)GCA_017656525scaffoldncbi1833
66792Rhodococcus erythropolis NBRC 155671219014.3wgspatric1219014
66792Rhodococcus erythropolis strain CGMCC 1.2362 (pRZP1) strain CGMCC 1.2362 (pRZP1) strain CGMCC 1.2362 (pRZP1)1833.190wgspatric1833
66792Rhodococcus erythropolis strain JCM 32011833.121wgspatric1833
66792Rhodococcus erythropolis NBRC 155672731957592draftimg1219014
67770Rhodococcus erythropolis NBRC 15567GCA_001552595contigncbi1219014
67770Rhodococcus erythropolis JCM 3201GCA_003990875contigncbi1833
66792Rhodococcus erythropolis DSM 43066GCA_022134675contigncbi1833

GC content

@refGC-contentmethod
6777062.4genome sequence analysis
6777062.7high performance liquid chromatography (HPLC)
6777070.6thermal denaturation, midpoint method (Tm)
6777060.2thermal denaturation, midpoint method (Tm)
6777067thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno72no
motileno92.787no
gram-positiveyes85.69no
anaerobicno99.37no
aerobicyes89.755no
halophileno92.508no
spore-formingno68.427no
thermophileno99.379no
glucose-utilyes90.638yes
flagellatedno98.312no
glucose-fermentno89.982yes

External links

@ref: 10729

culture collection no.: DSM 43066, ATCC 25544, ATCC 4277, CBS 266.39, CCM 277, CIP 104179, DSM 763, IFO 15567, JCM 3201, NBRC 15567, NCIB 11148, NCIB 9158, NRRL B-16025, BCRC 10909, CCT 1878, CCUG 23603, CECT 3013, CGMCC 1.2362, CGMCC 4.1814, CIP 104662, DSM 743, HAMBI 1953, IAM 12122, IFM 0165, IMET 7462, IMSNU 20115, JCM 20419, KCTC 1062, LMG 5359, NBIMCC 1360, NCIMB 11148, NCIMB 9158, NCTC 13021, NRRL B-1532, PCM 2150, VKM Ac-1337, VKM Ac-858

straininfo link

  • @ref: 80122
  • straininfo: 36959

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny9226927Reclassification of Nocardioides simplex ATCC 13260, ATCC 19565, and ATCC 19566 as Rhodococcus erythropolis.Yoon JH, Lee JS, Shin YK, Park YH, Lee STInt J Syst Bacteriol10.1099/00207713-47-3-9041997DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Molecular Sequence Data, Nocardiaceae/*classification/genetics, Phylogeny, Rhodococcus/*classification/geneticsGenetics
Enzymology11914155Rhodococcus erythropolis ATCC 25544 as a suitable source of cholesterol oxidase: cell-linked and extracellular enzyme synthesis, purification and concentration.Sojo MM, Bru RR, Garcia-Carmona FFBMC Biotechnol10.1186/1472-6750-2-32002Cholesterol Oxidase/*biosynthesis/chemistry/*isolation & purification, Detergents/chemistry, Fermentation, Industrial Microbiology/economics/methods, Octoxynol, Polyethylene Glycols/chemistry, Rhodococcus/chemistry/*enzymologyPhylogeny
Metabolism12200306Rhamnolipid stimulates uptake of hydrophobic compounds by Pseudomonas aeruginosa.Noordman WH, Janssen DBAppl Environ Microbiol10.1128/AEM.68.9.4502-4508.200220021-Naphthylamine/analogs & derivatives/metabolism, Alkanes/*metabolism, Alkenes/metabolism, Aniline Compounds/metabolism, Biodegradation, Environmental, Biological Transport, Fluorescent Dyes, Glycolipids/*metabolism, Hydrocarbons/metabolism, Hydrophobic and Hydrophilic Interactions, Pseudomonas aeruginosa/*metabolism, Surface-Active Agents/*metabolism
Metabolism12862232Color removal ability of a streptomycin resistant decolorizing strain Rhodococcus erythropolis (ATCC:4277.1).Hu TLWater Sci Technol2003Azo Compounds/*metabolism, Biodegradation, Environmental, Coloring Agents/*metabolism, Drug Resistance, Microbial, Industrial Waste, Rhodococcus/drug effects/*physiology, Streptomycin/*pharmacology, Textile Industry, Water Purification/*methodsBiotechnology
Enzymology14532022Diversity of nitrile hydratase and amidase enzyme genes in Rhodococcus erythropolis recovered from geographically distinct habitats.Brandao PF, Clapp JP, Bull ATAppl Environ Microbiol10.1128/AEM.69.10.5754-5766.20032003Amidohydrolases/chemistry/*genetics/metabolism, Amino Acid Sequence, Ecosystem, *Genetic Variation, Geologic Sediments/microbiology, Hydro-Lyases/chemistry/*genetics/metabolism, Molecular Sequence Data, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, Polymorphism, Single-Stranded Conformational, Rhodococcus/*enzymology/genetics/growth & development, Seawater/*microbiology, Sequence Alignment, Sequence Analysis, DNA, *Soil MicrobiologyMetabolism
Enzymology15268935Isolation and characterization of the Rhodococcus opacus thiostrepton-inducible genes tipAL and tipAS: application for recombinant protein expression in Rhodococcus.Dong L, Nakashima N, Tamura N, Tamura TFEMS Microbiol Lett10.1016/j.femsle.2004.06.0122004Artificial Gene Fusion, Bacterial Proteins/chemistry/genetics/isolation & purification, Cloning, Molecular, Culture Media/chemistry, DNA, Bacterial/chemistry/isolation & purification, *Gene Expression Regulation, Bacterial, *Genes, Bacterial, Molecular Sequence Data, *Promoter Regions, Genetic, Recombinant Proteins/metabolism, Rhodococcus/*genetics, Sequence Analysis, DNA, Sequence Analysis, Protein, Sequence Deletion, Thiostrepton/*metabolism, Transcription, GeneticTranscriptome
Enzymology16535152A Long-Chain Secondary Alcohol Dehydrogenase from Rhodococcus erythropolis ATCC 4277.Ludwig B, Akundi A, Kendall KAppl Environ Microbiol10.1128/aem.61.10.3729-3733.19951995
Phylogeny18048720Rhodococcus qingshengii sp. nov., a carbendazim-degrading bacterium.Xu JL, He J, Wang ZC, Wang K, Li WJ, Tang SK, Li SPInt J Syst Evol Microbiol10.1099/ijs.0.65095-02007Aerobiosis/physiology, Bacterial Typing Techniques, Benzimidazoles/*metabolism, Carbamates/*metabolism, Carbohydrates/analysis, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Locomotion/physiology, Molecular Sequence Data, Mycolic Acids/analysis, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodococcus/chemistry/*classification/genetics/*isolation & purification, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Temperature, Vitamin K 2/analysisMetabolism
18587766Ultrasound enhanced bioprocesses: cholesterol oxidation by Rhodococcus erythropolis.Bar RBiotechnol Bioeng10.1002/bit.2603205101988
Phylogeny19651732Rhodococcus jialingiae sp. nov., an actinobacterium isolated from sludge of a carbendazim wastewater treatment facility.Wang Z, Xu J, Li Y, Wang K, Wang Y, Hong Q, Li WJ, Li SPInt J Syst Evol Microbiol10.1099/ijs.0.013219-02009Base Sequence, Benzimidazoles/*metabolism, Carbamates/*metabolism, China, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodococcus/*classification/genetics/metabolism, Sequence Homology, Nucleic Acid, Sewage/*microbiology, *Water MicrobiologyMetabolism
Phylogeny19716527Phylogenetic analysis of Rhodococcus erythropolis based on the variation of ribosomal proteins as observed by matrix-assisted laser desorption ionization-mass spectrometry without using genome information.Teramoto K, Kitagawa W, Sato H, Torimura M, Tamura T, Tao HJ Biosci Bioeng10.1016/j.jbiosc.2009.04.0102009Anti-Bacterial Agents/biosynthesis, Bacterial Proteins/*genetics, Cluster Analysis, DNA Gyrase/genetics, Gene Expression Profiling/methods, Genome, Bacterial, Rhodococcus/*classification/*genetics, Ribosomal Proteins/*genetics, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/*methodsGenetics
Enzymology21038095A high-throughput screening strategy for nitrile-hydrolyzing enzymes based on ferric hydroxamate spectrophotometry.He YC, Ma CL, Xu JH, Zhou LAppl Microbiol Biotechnol10.1007/s00253-010-2977-52010Alcaligenes/enzymology, Aminohydrolases/isolation & purification/*metabolism, Ferric Compounds/*analysis, High-Throughput Screening Assays/methods, Hydro-Lyases/isolation & purification/*metabolism, Hydrolysis, Hydroxamic Acids/*analysis, Nitriles/*metabolism, Rhodococcus/enzymology, Spectrophotometry/*methodsMetabolism
Enzymology22489464[Cloning, expression and characterization of chiral alcohol dehydrogenase from Rhodococcus erythropolis ATCC 4277].Zhu Q, Jia H, Li Y, Jia L, Ma Y, Wei PWei Sheng Wu Xue Bao2012Alcohol Dehydrogenase/*genetics, Chlorides/pharmacology, Cloning, Molecular, Hydrogen-Ion Concentration, Plasmids, Rhodococcus/*genetics, Stereoisomerism, Temperature, Zinc Compounds/pharmacology
Metabolism25163887Biodesulfurization of a system containing synthetic fuel using Rhodococcus erythropolis ATCC 4277.Maass D, de Oliveira D, de Souza AA, Souza SMAppl Biochem Biotechnol10.1007/s12010-014-1189-32014Alkanes/chemistry/metabolism, Analysis of Variance, Biodegradation, Environmental, Bioreactors/*microbiology, Rhodococcus/*metabolism, Sulfur/*chemistry, Thiophenes/*chemistry/*metabolism
Metabolism25658510Metabolomics of the bio-degradation process of aflatoxin B1 by actinomycetes at an initial pH of 6.0.Eshelli M, Harvey L, Edrada-Ebel R, McNeil BToxins (Basel)10.3390/toxins70204392015Aflatoxin B1/*metabolism, Biodegradation, Environmental, Food Contamination/*prevention & control, Hot Temperature, Hydrogen-Ion Concentration, Metabolomics/*methods, Rhodococcus/*metabolism, Streptomyces aureofaciens/*metabolism, Streptomyces lividans/*metabolismStress
Metabolism25759162Desulfurization and denitrogenation of heavy gas oil by Rhodococcus erythropolis ATCC 4277.Maass D, Todescato D, Moritz DE, Oliveira JV, Oliveira D, Ulson de Souza AA, Guelli Souza SMBioprocess Biosyst Eng10.1007/s00449-015-1386-72015Gases/*metabolism, Nitrogen Dioxide/*metabolism, *Petroleum, Rhodococcus/*growth & development, Sulfur Dioxide/*metabolism
Metabolism26201481An Evaluation of Kinetic Models in the Biodesulfurization of Synthetic Oil by Rhodococcus erythropolis ATCC 4277.Maass D, Mayer DA, Moritz DE, Oliveira D, de Souza AA, Souza SMAppl Biochem Biotechnol10.1007/s12010-015-1764-22015Fossil Fuels/*microbiology, Kinetics, *Models, Biological, Rhodococcus/*metabolism, Solvents/chemistry, Sulfur/*metabolism, Thiophenes/metabolismEnzymology
Metabolism28528382Optimal Production of a Rhodococcus erythropolis ATCC 4277 Biocatalyst for Biodesulfurization and Biodenitrogenation Applications.Todescato D, Maass D, Mayer DA, Vladimir Oliveira J, de Oliveira D, Ulson de Souza SMAG, Ulson de Souza AAAppl Biochem Biotechnol10.1007/s12010-017-2505-52017*Biomass, Catalysis, Nitrogen/*metabolism, Rhodococcus/*growth & development, Sulfates/*metabolismBiotechnology
Phylogeny29143212Rhodococcus psychrotolerans sp. nov., isolated from rhizosphere of Deschampsia antarctica.Silva LJ, Souza DT, Genuario DB, Hoyos HAV, Santos SN, Rosa LH, Zucchi TD, Melo ISAntonie Van Leeuwenhoek10.1007/s10482-017-0983-72017Antarctic Regions, Base Composition, Carbohydrate Metabolism, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Genome, Bacterial/genetics, Peptidoglycan/chemistry, Phospholipids/analysis, *Phylogeny, Poaceae/*microbiology, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Rhodococcus/chemistry/*classification/genetics/metabolism, *Soil Microbiology, Species Specificity, Temperature, Vitamin K 2/analogs & derivatives/analysisMetabolism
Genetics30948473Genome Sequence of Rhodococcus erythropolis Type Strain JCM 3201.Yoshida K, Kitagawa W, Ishiya K, Mitani Y, Nakashima N, Aburatani S, Tamura TMicrobiol Resour Announc10.1128/MRA.01730-182019
Metabolism31292679Biomining of iron-containing nanoparticles from coal tailings.Maass D, de Medeiros Machado M, Rovaris BC, Bernardin AM, de Oliveira D, Hotza DAppl Microbiol Biotechnol10.1007/s00253-019-10001-22019Biomass, Biotransformation, *Coal, Environmental Pollutants/metabolism, Iron/*metabolism, Metal Nanoparticles/chemistry/*microbiology, *Mining, Particle Size, Rhodococcus/metabolism, Sulfur/metabolism
Metabolism31941392Different bioavailability of phenanthrene to two bacterial species and effects of trehalose lipids on the bioavailability.Chang JS, Cha DK, Radosevich M, Jin YJ Environ Sci Health A Tox Hazard Subst Environ Eng10.1080/10934529.2020.17121762020Biodegradation, Environmental, Biological Availability, Glycolipids/*metabolism, Phenanthrenes/analysis/*metabolism, Pseudomonas/*metabolism, Rhodococcus/*metabolism, Soil/chemistry, *Soil Microbiology, Soil Pollutants/analysis/*metabolism, Surface-Active Agents/metabolism, Trehalose/*metabolism

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10729Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43066)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43066
19935Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM43066.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
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34557Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16059
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
80122Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36959.1StrainInfo: A central database for resolving microbial strain identifiers
119131Curators of the CIPCollection of Institut Pasteur (CIP 104179)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104179
119132Curators of the CIPCollection of Institut Pasteur (CIP 104662)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104662