Strain identifier
BacDive ID: 10863
Type strain:
Species: Nocardia calcarea
Strain history: LMG 16262 <-- CCM 2769 <-- R. L. Tate.
NCBI tax ID(s): 1833 (species)
General
@ref: 8989
BacDive-ID: 10863
DSM-Number: 20665
keywords: 16S sequence, Bacteria, mesophilic, human pathogen
description: Nocardia calcarea DSM 20665 is a mesophilic human pathogen that was isolated from soil.
NCBI tax id
- NCBI tax id: 1833
- Matching level: species
strain history
@ref | history |
---|---|
8989 | <- H. Seiler <- ATCC <- R.L. Tate (Arthrobacter picolinophilus) |
67770 | LMG 16262 <-- CCM 2769 <-- R. L. Tate. |
doi: 10.13145/bacdive10863.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Nocardiaceae
- genus: Nocardia
- species: Nocardia calcarea
- full scientific name: Nocardia calcarea Metcalfe and Brown 1957 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Arthrobacter picolinophilus
@ref: 8989
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus erythropolis
full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 emend. Nouioui et al. 2018
type strain: no
Culture and growth conditions
culture medium
- @ref: 8989
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8989 | positive | growth | 28-37 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
@ref | compound |
---|---|
8989 | picolinic acid hydrolase |
20216 | Picolinic acid hydrolase |
67770 | Picolinic acid hydroxylase |
observation
- @ref: 67770
- observation: quinones: MK-8(H2)
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
8989 | soil |
67770 | Soil |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 8989
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Rhodococcus erythropolis DSM 20665 16S ribosomal RNA gene, partial sequence
- accession: AY017116
- length: 625
- database: ena
- NCBI tax ID: 1833
GC content
- @ref: 67770
- GC-content: 65.2
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 8989
culture collection no.: DSM 20665, ATCC 27854, JCM 11573, CCM 2769, KCTC 3483, LMG 16262
straininfo link
- @ref: 80119
- straininfo: 8183
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8989 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20665) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20665 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20216 | Curators of the HKI | http://www.leibniz-hki.de/de/ | Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
80119 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID8183.1 | StrainInfo: A central database for resolving microbial strain identifiers |