Strain identifier

BacDive ID: 10863

Type strain: No

Species: Nocardia calcarea

Strain history: LMG 16262 <-- CCM 2769 <-- R. L. Tate.

NCBI tax ID(s): 1833 (species)

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General

@ref: 8989

BacDive-ID: 10863

DSM-Number: 20665

keywords: 16S sequence, Bacteria, mesophilic, human pathogen

description: Nocardia calcarea DSM 20665 is a mesophilic human pathogen that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1833
  • Matching level: species

strain history

@refhistory
8989<- H. Seiler <- ATCC <- R.L. Tate (Arthrobacter picolinophilus)
67770LMG 16262 <-- CCM 2769 <-- R. L. Tate.

doi: 10.13145/bacdive10863.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia calcarea
  • full scientific name: Nocardia calcarea Metcalfe and Brown 1957 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Arthrobacter picolinophilus

@ref: 8989

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus erythropolis

full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 emend. Nouioui et al. 2018

type strain: no

Culture and growth conditions

culture medium

  • @ref: 8989
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8989positivegrowth28-37mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
8989picolinic acid hydrolase
20216Picolinic acid hydrolase
67770Picolinic acid hydroxylase

observation

  • @ref: 67770
  • observation: quinones: MK-8(H2)

Isolation, sampling and environmental information

isolation

@refsample type
8989soil
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 8989
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Rhodococcus erythropolis DSM 20665 16S ribosomal RNA gene, partial sequence
  • accession: AY017116
  • length: 625
  • database: ena
  • NCBI tax ID: 1833

GC content

  • @ref: 67770
  • GC-content: 65.2
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 8989

culture collection no.: DSM 20665, ATCC 27854, JCM 11573, CCM 2769, KCTC 3483, LMG 16262

straininfo link

  • @ref: 80119
  • straininfo: 8183

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8989Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20665)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20665
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
80119Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID8183.1StrainInfo: A central database for resolving microbial strain identifiers