Strain identifier
BacDive ID: 10724
Type strain: 
Species: Nocardia globerula
Strain Designation: BU 57,1
Strain history: <- IMET <- H. Mordarska (BU 57,1)
NCBI tax ID(s): 1818 (species)
version 8.1 (current version)
General
@ref: 12387
BacDive-ID: 10724
DSM-Number: 46019
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Nocardia globerula BU 57 is a mesophilic bacterium of the family Nocardiaceae.
NCBI tax id
- NCBI tax id: 1818
- Matching level: species
strain history
- @ref: 12387
- history: <- IMET <- H. Mordarska (BU 57,1)
doi: 10.13145/bacdive10724.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Nocardiaceae
- genus: Nocardia
- species: Nocardia globerula
- full scientific name: Nocardia globerula (Gray 1928) Waksman and Henrici 1948 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Mycobacterium globerulum
@ref: 12387
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Nocardia
species: Nocardia globerula
full scientific name: Nocardia globerula (Gray 1928) Waksman and Henrici 1948
strain designation: BU 57,1
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 93.111 | |
| 69480 | 100 | positive |
multimedia
- @ref: 12387
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46019.jpg
- caption: Medium 535 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 12387 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 12387 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
culture temp
- @ref: 12387
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 91 |
| 69480 | no | 99.528 |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_3444.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_181;97_585;98_672;99_3444&stattab=map
- Last taxonomy: Nocardiaceae
- 16S sequence: AF430065
- Sequence Identity:
- Total samples: 5041
- soil counts: 1235
- aquatic counts: 1183
- animal counts: 2519
- plant counts: 104
Safety information
risk assessment
- @ref: 12387
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Nocardia globerula strain DSM 46019 16S ribosomal RNA gene, complete sequence | AF430065 | 1493 | ena | 1818 |
| 20218 | Nocardia globerula strain DSM 46019 note copy 1 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536451 | 329 | ena | 1818 |
| 20218 | Nocardia globerula strain DSM 46019 note copy 2 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536452 | 349 | ena | 1818 |
| 20218 | Nocardia globerula strain DSM 46019 note copy 3 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536453 | 328 | ena | 1818 |
| 20218 | Nocardia globerula strain DSM 46019 note copy 4 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536454 | 345 | ena | 1818 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodococcus erythropolis ATCC 15903 | GCA_003388635 | scaffold | ncbi | 1833 |
| 66792 | Rhodococcus erythropolis strain ATCC 15903 | 1833.117 | wgs | patric | 1833 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 91 | no |
| flagellated | no | 98.025 | no |
| gram-positive | yes | 84.152 | no |
| anaerobic | no | 99.293 | no |
| aerobic | yes | 90.834 | no |
| halophile | no | 94.477 | no |
| spore-forming | no | 65.7 | no |
| glucose-util | yes | 90.704 | no |
| thermophile | no | 99.563 | no |
| motile | no | 92.946 | no |
| glucose-ferment | no | 90.753 | no |
External links
@ref: 12387
culture collection no.: DSM 46019, ATCC 15903, IMET 7184, RIA 643
straininfo link
- @ref: 79992
- straininfo: 36568
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 12387 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46019) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46019 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 79992 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID36568.1 | StrainInfo: A central database for resolving microbial strain identifiers |