Strain identifier
BacDive ID: 10678
Type strain: 
Species: Nocardia otitidiscaviarum
Strain history: <- R. E. Gordon, IMRU <- L. N. Mohapatra, All India Inst. of Med. Sci, New Delhi, 12
NCBI tax ID(s): 1823 (species)
General
@ref: 10807
BacDive-ID: 10678
DSM-Number: 43400
keywords: 16S sequence, Bacteria, human pathogen
description: Nocardia otitidiscaviarum DSM 43400 is a human pathogen that was isolated from soil.
NCBI tax id
- NCBI tax id: 1823
- Matching level: species
strain history
- @ref: 10807
- history: <- R. E. Gordon, IMRU <- L. N. Mohapatra, All India Inst. of Med. Sci, New Delhi, 12
doi: 10.13145/bacdive10678.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Nocardiaceae
- genus: Nocardia
- species: Nocardia otitidiscaviarum
- full scientific name: Nocardia otitidiscaviarum corrig. Snijders 1924 (Approved Lists 1980)
@ref: 10807
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Nocardia
species: Nocardia otitidiscaviarum
full scientific name: Nocardia otitidiscaviarum Snijders 1924 emend. Nouioui et al. 2018
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10807 | PEPTONE - MEAT EXTRACT - SOIL EXTRACT AGAR (PFE) (DSMZ Medium 251) | yes | https://mediadive.dsmz.de/medium/251 | Name: PEPTONE - MEAT EXTRACT - SOIL EXTRACT AGAR (PFE) (DSMZ Medium 251) Composition: Glycerol 20.0 g/l Agar 20.0 g/l Proteose peptone no. 3 5.0 g/l Meat extract 3.0 g/l Soil extract Distilled water |
| 10807 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 10807
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 10807
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 10807
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 124043
- description: Nocardia otitidiscaviarum strain DSM 43400 16S ribosomal RNA gene, partial sequence.
- accession: MW563853
- length: 1397
- database: nuccore
- NCBI tax ID: 1823
External links
@ref: 10807
culture collection no.: DSM 43400, IMRU 1316
straininfo link
- @ref: 79948
- straininfo: 50271
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10807 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43400) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43400 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 79948 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50271.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |