Archive BacDiveID:10.13145/bacdive10677.20240510.9

Strain identifier

BacDive ID: 10677

Type strain:

Species: Nocardia otitidiscaviarum

Strain Designation: A0930-H-5187

Strain history: <- R. E. Gordon, IMRU <- H. D. Tresner, American Cyanamid Co., A0930-H-5187, (Streptomyces albus)

NCBI tax ID(s): 1823 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 10806

BacDive-ID: 10677

DSM-Number: 43398

keywords: 16S sequence, Bacteria, human pathogen

description: Nocardia otitidiscaviarum A0930-H-5187 is a human pathogen of the family Nocardiaceae.

NCBI tax id

NCBI tax id: 1823
Matching level: species

strain history

@ref: 10806
history: <- R. E. Gordon, IMRU <- H. D. Tresner, American Cyanamid Co., A0930-H-5187, (Streptomyces albus)

doi: 10.13145/bacdive10677.20240510.9

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Mycobacteriales
family: Nocardiaceae
genus: Nocardia
species: Nocardia otitidiscaviarum
full scientific name: Nocardia otitidiscaviarum corrig. Snijders 1924 (Approved Lists 1980)

@ref: 10806

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Nocardia

species: Nocardia otitidiscaviarum

full scientific name: Nocardia otitidiscaviarum Snijders 1924 emend. Nouioui et al. 2018

strain designation: A0930-H-5187

type strain: no

Culture and growth conditions

culture medium

@ref: 10806
name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
growth: yes
link: https://mediadive.dsmz.de/medium/65
composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@ref: 10806
growth: positive
type: growth
temperature: 28

Safety information

risk assessment

@ref: 10806
pathogenicity human: yes
pathogenicity animal: yes
biosafety level: 2
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Nocardia otitidiscaviarum strain DSM 43398 note copy 1 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF536467	317	nuccore	1823
20218	Nocardia otitidiscaviarum strain DSM 43398 note copy 2 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF536468	296	nuccore	1823
124043	Nocardia otitidiscaviarum strain DSM 43398 16S ribosomal RNA gene, partial sequence.	MW563852	1367	nuccore	1823

External links

@ref: 10806

culture collection no.: DSM 43398, IMRU 1088

straininfo link

@ref: 79947
straininfo: 50270

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
10806	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43398)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-43398
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg		10.1093/nar/gkaa1025	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	Nucleic Acids Res. 49: D498-D508 2020	33211880
79947	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID50270.1	StrainInfo: A central database for resolving microbial strain identifiers
124043	Dr. Isabel Schober, Dr. Julia Koblitz			Data extracted from sequence databases, automatically matched based on designation and taxonomy