Strain identifier

BacDive ID: 10665

Type strain: No

Species: Nocardia farcinica

Strain Designation: S390, Noc. 1

Strain history: <- NCTC (Actinomyces sumatrae) <- E.P. Snijders, Noc. 1 (Nocardia cuniculi)

NCBI tax ID(s): 37329 (species)

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General

@ref: 10900

BacDive-ID: 10665

DSM-Number: 43244

keywords: 16S sequence, Bacteria, mesophilic, human pathogen

description: Nocardia farcinica S390 is a mesophilic human pathogen that was isolated from rabbit.

NCBI tax id

  • NCBI tax id: 37329
  • Matching level: species

strain history

  • @ref: 10900
  • history: <- NCTC (Actinomyces sumatrae) <- E.P. Snijders, Noc. 1 (Nocardia cuniculi)

doi: 10.13145/bacdive10665.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia farcinica
  • full scientific name: Nocardia farcinica Trevisan 1889 (Approved Lists 1980)

@ref: 10900

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Nocardia

species: Nocardia farcinica

full scientific name: Nocardia farcinica Trevisan 1889 emend. Nouioui et al. 2018

strain designation: S390, Noc. 1

type strain: no

Culture and growth conditions

culture medium

  • @ref: 10900
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 10900
  • growth: positive
  • type: growth
  • temperature: 28

Isolation, sampling and environmental information

isolation

  • @ref: 10900
  • sample type: rabbit
  • geographic location: Sumatra
  • country: Malaysia
  • origin.country: MYS
  • continent: Asia

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Leporidae (Rabbit/Hare)

Safety information

risk assessment

  • @ref: 10900
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Nocardia farcinica strain DSM 43244 note copy 1 rrnC operon, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF536438345nuccore37329
20218Nocardia farcinica strain DSM 43244 note copy 2 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF536439345nuccore37329
20218Nocardia farcinica strain DSM 43244 note copy 3 rrnA operon, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF536440332nuccore37329
124043Nocardia farcinica strain DSM 43244 16S ribosomal RNA gene, partial sequence.MW5638441412nuccore37329

External links

@ref: 10900

culture collection no.: DSM 43244, ATCC 6864, DSM 43667, IMET 7019, NCTC 1935

straininfo link

  • @ref: 79935
  • straininfo: 34799

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10900Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43244)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43244
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
79935Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID34799.1StrainInfo: A central database for resolving microbial strain identifiers
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy