Strain identifier
BacDive ID: 10585
Type strain:
Species: Gordonia alkanivorans
Strain Designation: 2102-488
Strain history: CIP <- 1999, C. Kummer, Hans Knöll Inst., Jena, Germany: strain HKI 0136
NCBI tax ID(s): 1027371 (strain), 84096 (species)
General
@ref: 11710
BacDive-ID: 10585
DSM-Number: 44369
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive
description: Gordonia alkanivorans 2102-488 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from tar and phenol contaminated soil.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1027371 | strain |
84096 | species |
strain history
@ref | history |
---|---|
11710 | <- C. Kummer, Hans-Knöll Inst., Jena, HKI 0136 |
67770 | DSM 44369 <-- C. Kummer HKI 0136. |
116254 | CIP <- 1999, C. Kummer, Hans Knöll Inst., Jena, Germany: strain HKI 0136 |
doi: 10.13145/bacdive10585.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Gordoniaceae
- genus: Gordonia
- species: Gordonia alkanivorans
- full scientific name: Gordonia alkanivorans Kummer et al. 1999
synonyms
- @ref: 20215
- synonym: Gordonia nitida
@ref: 11710
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Gordoniaceae
genus: Gordonia
species: Gordonia alkanivorans
full scientific name: Gordonia alkanivorans Kummer et al. 1999
strain designation: 2102-488
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | positive | 100 | ||
116254 | positive | rod-shaped | no |
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
19655 | Pure orange | 10-14 days | ISP 2 |
19655 | Pure orange | 10-14 days | ISP 3 |
19655 | Pure orange | 10-14 days | ISP 4 |
19655 | Pure orange | 10-14 days | ISP 5 |
19655 | Pure orange | 10-14 days | ISP 6 |
19655 | Pure orange | 10-14 days | ISP 7 |
116254 |
multicellular morphology
@ref | forms multicellular complex | medium name |
---|---|---|
19655 | no | ISP 2 |
19655 | no | ISP 3 |
19655 | no | ISP 4 |
19655 | no | ISP 5 |
19655 | no | ISP 6 |
19655 | no | ISP 7 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
11710 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
19655 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
19655 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
19655 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
19655 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
19655 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
19655 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
40303 | MEDIUM 29- Brain heart agar | yes | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |
116254 | CIP Medium 29 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
19655 | positive | optimum | 28 | mesophilic |
11710 | positive | growth | 28 | mesophilic |
40303 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
116254 | positive | growth | 25-41 | |
116254 | no | growth | 10 | psychrophilic |
116254 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 116254
- oxygen tolerance: obligate aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 99 |
69480 | no | 99.891 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
19655 | NaCl | positive | maximum | 5 % |
116254 | NaCl | positive | growth | 0-6 % |
116254 | NaCl | no | growth | 8 % |
116254 | NaCl | no | growth | 10 % |
observation
- @ref: 67770
- observation: quinones: MK-9(H2), MK-8(H2)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
19655 | 17234 | glucose | + | |
19655 | 22599 | arabinose | - | |
19655 | 17992 | sucrose | + | |
19655 | 18222 | xylose | - | |
19655 | 17268 | myo-inositol | - | |
19655 | 29864 | mannitol | + | |
19655 | 28757 | fructose | + | |
19655 | 26546 | rhamnose | - | |
19655 | 16634 | raffinose | - | |
19655 | 62968 | cellulose | + | |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | + | builds acid from |
68371 | 28066 | gentiobiose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | + | builds acid from |
68371 | 17992 | sucrose | + | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | - | builds acid from |
68371 | 17306 | maltose | - | builds acid from |
68371 | 17057 | cellobiose | - | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 4853 | esculin | + | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | - | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | - | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 16988 | D-ribose | - | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | - | builds acid from |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | + | hydrolysis |
116254 | 16947 | citrate | - | carbon source |
116254 | 4853 | esculin | - | hydrolysis |
116254 | 606565 | hippurate | - | hydrolysis |
116254 | 17632 | nitrate | + | reduction |
116254 | 16301 | nitrite | - | reduction |
116254 | 17632 | nitrate | - | respiration |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | + | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | + | fermentation |
68379 | 28087 | glycogen | - | fermentation |
antibiotic resistance
- @ref: 116254
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: yes
- is resistant: no
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
116254 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
68368 | 15688 | acetoin | - | ||
68368 | 35581 | indole | - | ||
116254 | 15688 | acetoin | - | ||
116254 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | gelatinase | - | |
68379 | urease | + | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
116254 | oxidase | - | |
116254 | beta-galactosidase | - | 3.2.1.23 |
116254 | alcohol dehydrogenase | - | 1.1.1.1 |
116254 | gelatinase | - | |
116254 | amylase | - | |
116254 | DNase | + | |
116254 | caseinase | - | 3.4.21.50 |
116254 | catalase | + | 1.11.1.6 |
116254 | tween esterase | + | |
116254 | gamma-glutamyltransferase | - | 2.3.2.2 |
116254 | lecithinase | - | |
116254 | lipase | - | |
116254 | lysine decarboxylase | - | 4.1.1.18 |
116254 | ornithine decarboxylase | - | 4.1.1.17 |
116254 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
116254 | protease | - | |
116254 | tryptophan deaminase | - | |
116254 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19655 | - | - | - | + | - | - | + | - | - | + | - | - | - | - | - | - | - | + | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19655 | + | - | + | - | + | + | + | + | - | + | + | - | - | - | + | + | - | - | - | |
116254 | + | + | + | - | + | + | + | - | - | + | + | - | + | - | + | + | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
19655 | - | + | + | + | + | - | + | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116254 | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | + | + | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116254 | + | + | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | - | - | - | - | - | - | + | + | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | + | - | - | - | + | - | + | - | - | - | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|
11710 | tar and phenol contaminated soil | Thuringia, Rosnitz, area of the former tar factory | Germany | DEU | Europe | |
67770 | Tar- and phenol-contaminated soil of the former tar factory | Rositz | Germany | DEU | Europe | |
116254 | Environment, Tar and phenol contaminated soil | Thuringia | Germany | DEU | Europe | 1996 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Contamination | |
#Engineered | #Industrial | #Engineered product |
#Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_952.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_85;97_90;98_746;99_952&stattab=map
- Last taxonomy: Gordonia
- 16S sequence: Y18054
- Sequence Identity:
- Total samples: 706
- soil counts: 155
- aquatic counts: 238
- animal counts: 301
- plant counts: 12
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
11710 | 1 | Risk group (German classification) |
19655 | 1 | Risk group (German classification) |
116254 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Gordonia alkanivorans strain CIP 106363 16S ribosomal RNA gene, partial sequence | DQ020577 | 464 | ena | 1027371 |
20218 | Gordonia alkalivorans 16S rRNA gene | Y18054 | 1490 | ena | 84096 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Gordonia alkanivorans NBRC 16433 | 1027371.3 | wgs | patric | 1027371 |
66792 | Gordonia alkanivorans NBRC 16433 | 2512047058 | draft | img | 1027371 |
67770 | Gordonia alkanivorans NBRC 16433 | GCA_000225505 | contig | ncbi | 1027371 |
GC content
@ref | GC-content | method |
---|---|---|
11710 | 68 | |
67770 | 68 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 99 | no |
motile | no | 94.283 | no |
flagellated | no | 98.519 | no |
gram-positive | yes | 85.162 | no |
anaerobic | no | 99.596 | no |
aerobic | yes | 90.059 | no |
halophile | no | 85.71 | no |
spore-forming | no | 86.593 | no |
thermophile | no | 98.73 | yes |
glucose-util | yes | 89.306 | yes |
glucose-ferment | no | 90.1 | no |
External links
@ref: 11710
culture collection no.: DSM 44369, IFO 16433, JCM 10677, NBRC 16433, HKI 0136, CIP 106363, IFM 10352, KCTC 9951, NCIMB 13615
straininfo link
- @ref: 79860
- straininfo: 50595
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 10555331 | Gordonia alkanivorans sp. nov., isolated from tar-contaminated soil. | Kummer C, Schumann P, Stackebrandt E | Int J Syst Bacteriol | 10.1099/00207713-49-4-1513 | 1999 | Actinomycetales/*classification/genetics/isolation & purification/physiology, Alkanes/metabolism, Bacterial Typing Techniques, Base Composition, Biodegradation, Environmental, Coal Tar/*metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/*metabolism | Metabolism |
Phylogeny | 11155977 | Gordonia amicalis sp. nov., a novel dibenzothiophene-desulphurizing actinomycete. | Kim SB, Brown R, Oldfield C, Gilbert SC, Iliarionov S, Goodfellow M | Int J Syst Evol Microbiol | 10.1099/00207713-50-6-2031 | 2000 | Actinomycetales/chemistry/*classification/genetics/isolation & purification, DNA, Ribosomal/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Sulfur/*metabolism, Thiophenes/*metabolism | Genetics |
Phylogeny | 12148617 | Gordonia westfalica sp. nov., a novel rubber-degrading actinomycete. | Linos A, Berekaa MM, Steinbuchel A, Kim KK, Sproer C, Kroppenstedt RM | Int J Syst Evol Microbiol | 10.1099/00207713-52-4-1133 | 2002 | Actinomycetales/classification, *Automobiles, Bacterial Typing Techniques, Biodegradation, Environmental, Butadienes/metabolism, DNA, Ribosomal/analysis, Fatty Acids/analysis, Gordonia Bacterium/chemistry/*classification/genetics/physiology, *Hemiterpenes, Molecular Sequence Data, Nucleic Acid Hybridization, *Pentanes, Phylogeny, RNA, Ribosomal, 16S/genetics, Rubber/*metabolism, Sequence Analysis, DNA | Metabolism |
Phylogeny | 15774645 | Gordonia nitida Yoon et al. 2000 is a later synonym of Gordonia alkanivorans Kummer et al. 1999. | Arenskotter M, Linos A, Schumann P, Kroppenstedt RM, Steinbuchel A | Int J Syst Evol Microbiol | 10.1099/ijs.0.63400-0 | 2005 | DNA, Bacterial/analysis/*genetics, Deoxyribonucleases, Type II Site-Specific, Gordonia Bacterium/*classification/*genetics, Nucleic Acid Hybridization, Phylogeny, Ribotyping, Species Specificity |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
11710 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44369) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44369 | |||
19655 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM44369.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
40303 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18485 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
79860 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50595.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116254 | Curators of the CIP | Collection of Institut Pasteur (CIP 106363) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106363 |