Strain identifier
BacDive ID: 10567
Type strain:
Species: Gordonia rubripertincta
Strain Designation: Gdf N658, M658, T4
Strain history: CIP <- 1995, DSM <- IMET <- M. Goodfellow: strain M658, Rhodococcus corallinus
NCBI tax ID(s): 36822 (species)
General
@ref: 12416
BacDive-ID: 10567
DSM-Number: 46066
keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped
description: Gordonia rubripertincta Gdf N658 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Gordoniaceae.
NCBI tax id
- NCBI tax id: 36822
- Matching level: species
strain history
@ref | history |
---|---|
12416 | <- IMET <- M. Goodfellow (Rhodococcus corallinus), M658 |
122296 | CIP <- 1995, DSM <- IMET <- M. Goodfellow: strain M658, Rhodococcus corallinus |
doi: 10.13145/bacdive10567.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Gordoniaceae
- genus: Gordonia
- species: Gordonia rubripertincta
- full scientific name: Gordonia rubripertincta corrig. (Hefferan 1904) Stackebrandt et al. 1989
synonyms
@ref synonym 20215 Bacillus rubropertinctus 20215 Rhodococcus corallinus 20215 Serratia corallina 20215 Rhodococcus rubropertinctus 20215 Gordona rubropertinctus 20215 Gordonia rubropertinctus 20215 Gordona rubripertincta 20215 Gordona rubra
@ref: 12416
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Gordoniaceae
genus: Gordonia
species: Gordonia rubripertincta
full scientific name: Gordonia rubripertincta (Hefferan 1904) Stackebrandt et al. 1989 emend. Nouioui et al. 2018
strain designation: Gdf N658, M658, T4
type strain: no
Morphology
cell morphology
- @ref: 122296
- gram stain: positive
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
12416 | GYM+S MEDIUM (DSMZ Medium 214) | yes | https://mediadive.dsmz.de/medium/214 | Name: GYM+S MEDIUM (DSMZ Medium 214) Composition: Starch 20.0 g/l Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
12416 | ORGANIC MEDIUM 79 (DSMZ Medium 426) | yes | https://mediadive.dsmz.de/medium/426 | Name: ORGANIC MEDIUM 79 (DSMZ Medium 426) Composition: Agar 15.0 g/l Peptone 10.0 g/l Dextrose 10.0 g/l NaCl 6.0 g/l Yeast extract 2.0 g/l Casein peptone 2.0 g/l Distilled water |
41383 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
122296 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
12416 | positive | growth | 28 | mesophilic |
41383 | positive | growth | 30 | mesophilic |
122296 | positive | growth | 10-41 | |
122296 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 122296
- oxygen tolerance: obligate aerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
122296 | NaCl | positive | growth | 0-6 % |
122296 | NaCl | no | growth | 8 % |
122296 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
122296 | 16947 | citrate | - | carbon source |
122296 | 4853 | esculin | - | hydrolysis |
122296 | 17632 | nitrate | - | reduction |
122296 | 16301 | nitrite | - | reduction |
122296 | 17632 | nitrate | - | respiration |
metabolite production
- @ref: 122296
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
122296 | 15688 | acetoin | - | |
122296 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
122296 | oxidase | - | |
122296 | beta-galactosidase | - | 3.2.1.23 |
122296 | alcohol dehydrogenase | - | 1.1.1.1 |
122296 | gelatinase | - | |
122296 | amylase | - | |
122296 | DNase | - | |
122296 | caseinase | - | 3.4.21.50 |
122296 | catalase | + | 1.11.1.6 |
122296 | tween esterase | - | |
122296 | gamma-glutamyltransferase | - | 2.3.2.2 |
122296 | lecithinase | - | |
122296 | lipase | - | |
122296 | lysine decarboxylase | - | 4.1.1.18 |
122296 | ornithine decarboxylase | - | 4.1.1.17 |
122296 | protease | - | |
122296 | tryptophan deaminase | - | |
122296 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122296 | - | + | + | + | + | + | + | + | - | - | + | + | - | - | - | + | + | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122296 | + | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | - | - | - | - | - | - | + | - | - | - | - | - | - | + | - | - | - | - | - | - | - | + | - | - | - | - | - | + | - | - | + | - | - | - | + | - | - | - | - | - | - | - | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 122296
- isolation date: 1979
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
12416 | 1 | Risk group (German classification) |
122296 | 1 | Risk group (French classification) |
External links
@ref: 12416
culture collection no.: DSM 46066, CIP 104650, IMET 7481, Tsukamura 3606
straininfo link
- @ref: 79842
- straininfo: 50720
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
12416 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46066) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46066 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
41383 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/16582 | ||
68382 | Automatically annotated from API zym | |||
79842 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50720.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
122296 | Curators of the CIP | Collection of Institut Pasteur (CIP 104650) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104650 |