Strain identifier

BacDive ID: 10567

Type strain: No

Species: Gordonia rubripertincta

Strain Designation: Gdf N658, M658, T4

Strain history: CIP <- 1995, DSM <- IMET <- M. Goodfellow: strain M658, Rhodococcus corallinus

NCBI tax ID(s): 36822 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 12416

BacDive-ID: 10567

DSM-Number: 46066

keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Gordonia rubripertincta Gdf N658 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Gordoniaceae.

NCBI tax id

  • NCBI tax id: 36822
  • Matching level: species

strain history

@refhistory
12416<- IMET <- M. Goodfellow (Rhodococcus corallinus), M658
122296CIP <- 1995, DSM <- IMET <- M. Goodfellow: strain M658, Rhodococcus corallinus

doi: 10.13145/bacdive10567.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Gordoniaceae
  • genus: Gordonia
  • species: Gordonia rubripertincta
  • full scientific name: Gordonia rubripertincta corrig. (Hefferan 1904) Stackebrandt et al. 1989
  • synonyms

    @refsynonym
    20215Bacillus rubropertinctus
    20215Rhodococcus corallinus
    20215Serratia corallina
    20215Rhodococcus rubropertinctus
    20215Gordona rubropertinctus
    20215Gordonia rubropertinctus
    20215Gordona rubripertincta
    20215Gordona rubra

@ref: 12416

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Gordoniaceae

genus: Gordonia

species: Gordonia rubripertincta

full scientific name: Gordonia rubripertincta (Hefferan 1904) Stackebrandt et al. 1989 emend. Nouioui et al. 2018

strain designation: Gdf N658, M658, T4

type strain: no

Morphology

cell morphology

  • @ref: 122296
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12416GYM+S MEDIUM (DSMZ Medium 214)yeshttps://mediadive.dsmz.de/medium/214Name: GYM+S MEDIUM (DSMZ Medium 214) Composition: Starch 20.0 g/l Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
12416ORGANIC MEDIUM 79 (DSMZ Medium 426)yeshttps://mediadive.dsmz.de/medium/426Name: ORGANIC MEDIUM 79 (DSMZ Medium 426) Composition: Agar 15.0 g/l Peptone 10.0 g/l Dextrose 10.0 g/l NaCl 6.0 g/l Yeast extract 2.0 g/l Casein peptone 2.0 g/l Distilled water
41383MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
122296CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
12416positivegrowth28mesophilic
41383positivegrowth30mesophilic
122296positivegrowth10-41
122296nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 122296
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
122296NaClpositivegrowth0-6 %
122296NaClnogrowth8 %
122296NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12229616947citrate-carbon source
1222964853esculin-hydrolysis
12229617632nitrate-reduction
12229616301nitrite-reduction
12229617632nitrate-respiration

metabolite production

  • @ref: 122296
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12229615688acetoin-
12229617234glucose-

enzymes

@refvalueactivityec
122296oxidase-
122296beta-galactosidase-3.2.1.23
122296alcohol dehydrogenase-1.1.1.1
122296gelatinase-
122296amylase-
122296DNase-
122296caseinase-3.4.21.50
122296catalase+1.11.1.6
122296tween esterase-
122296gamma-glutamyltransferase-2.3.2.2
122296lecithinase-
122296lipase-
122296lysine decarboxylase-4.1.1.18
122296ornithine decarboxylase-4.1.1.17
122296protease-
122296tryptophan deaminase-
122296urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122296-+++++++--++---++---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122296++-+----------------------+------+--+------------+---+------+------+-------+-----+--+---+-------+-+

Isolation, sampling and environmental information

isolation

  • @ref: 122296
  • isolation date: 1979

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
124161Risk group (German classification)
1222961Risk group (French classification)

External links

@ref: 12416

culture collection no.: DSM 46066, CIP 104650, IMET 7481, Tsukamura 3606

straininfo link

  • @ref: 79842
  • straininfo: 50720

Reference

@idauthorscataloguedoi/urltitle
12416Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46066)https://www.dsmz.de/collection/catalogue/details/culture/DSM-46066
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
41383Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16582
68382Automatically annotated from API zym
79842Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50720.1StrainInfo: A central database for resolving microbial strain identifiers
122296Curators of the CIPCollection of Institut Pasteur (CIP 104650)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104650