Strain identifier
BacDive ID: 10542
Type strain:
Species: Gordonia bronchialis
Strain Designation: 3410
Strain history: CIP <- 1984, ATCC <- M. Tsukamara : strain 3410 <- Kondo
NCBI tax ID(s): 526226 (strain), 2054 (species)
General
@ref: 10903
BacDive-ID: 10542
DSM-Number: 43247
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive
description: Gordonia bronchialis 3410 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from sputum of woman with cavitary disease of both upper lungs.
NCBI tax id
NCBI tax id | Matching level |
---|---|
2054 | species |
526226 | strain |
strain history
@ref | history |
---|---|
10903 | <- NCTC |
67770 | KCC A-0198 <-- M. Tsukamura 3410. |
117049 | CIP <- 1984, ATCC <- M. Tsukamara : strain 3410 <- Kondo |
doi: 10.13145/bacdive10542.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Gordoniaceae
- genus: Gordonia
- species: Gordonia bronchialis
- full scientific name: Gordonia bronchialis corrig. (Tsukamura 1971) Stackebrandt et al. 1989
synonyms
@ref synonym 20215 Gordona bronchialis 20215 Rhodococcus bronchialis
@ref: 10903
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Gordoniaceae
genus: Gordonia
species: Gordonia bronchialis
full scientific name: Gordonia bronchialis (Tsukamura 1971) Stackebrandt et al. 1989 emend. Nouioui et al. 2018
strain designation: 3410
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | positive | 100 | ||
117049 | positive | rod-shaped | no |
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
19562 | Pastel orange | 10-14 days | ISP 2 |
19562 | Pastel orange | 10-14 days | ISP 3 |
19562 | Pastel orange | 10-14 days | ISP 4 |
19562 | Pastel orange | 10-14 days | ISP 5 |
19562 | Pastel orange | 10-14 days | ISP 6 |
19562 | Pastel orange | 10-14 days | ISP 7 |
117049 |
multicellular morphology
@ref | medium name | forms multicellular complex |
---|---|---|
19562 | ISP 2 | |
19562 | ISP 3 | no |
19562 | ISP 4 | no |
19562 | ISP 5 | no |
19562 | ISP 6 | no |
19562 | ISP 7 | no |
multimedia
- @ref: 66793
- multimedia content: EM_DSM_43247_1.jpg
- caption: electron microscopic image
- intellectual property rights: © HZI/Manfred Rohde
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
10903 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
10903 | GLYCEROL-SOIL MEDIUM (DSMZ Medium 80) | yes | https://mediadive.dsmz.de/medium/80 | Name: GLYCEROL-SOIL MEDIUM (DSMZ Medium 80) Composition: Glycerol 20.0 g/l Agar 15.0 g/l Peptone 5.0 g/l Beef extract 3.0 g/l Soil extract Distilled water |
19562 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
19562 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
19562 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
19562 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
19562 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
19562 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
40091 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
117049 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
10903 | positive | growth | 28 | mesophilic |
40091 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
117049 | positive | growth | 10-37 | |
117049 | no | growth | 41 | thermophilic |
117049 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 117049
- oxygen tolerance: obligate aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
19562 | no | |
69480 | no | 99.743 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
19562 | NaCl | positive | maximum | 2.5 % |
117049 | NaCl | positive | growth | 0-6 % |
117049 | NaCl | no | growth | 8 % |
117049 | NaCl | no | growth | 10 % |
observation
- @ref: 67770
- observation: quinones: MK-9(H2)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
19562 | 17234 | glucose | + | |
19562 | 22599 | arabinose | - | |
19562 | 17992 | sucrose | + | |
19562 | 18222 | xylose | - | |
19562 | 17268 | myo-inositol | + | |
19562 | 29864 | mannitol | - | |
19562 | 28757 | fructose | + | |
19562 | 26546 | rhamnose | - | |
19562 | 16634 | raffinose | - | |
19562 | 62968 | cellulose | - | |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | - | builds acid from |
68371 | 28066 | gentiobiose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | - | builds acid from |
68371 | 17306 | maltose | - | builds acid from |
68371 | 17057 | cellobiose | - | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 4853 | esculin | - | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | - | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 16988 | D-ribose | - | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | - | builds acid from |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | + | hydrolysis |
117049 | 16947 | citrate | - | carbon source |
117049 | 4853 | esculin | - | hydrolysis |
117049 | 17632 | nitrate | + | reduction |
117049 | 16301 | nitrite | - | reduction |
117049 | 132112 | sodium thiosulfate | + | builds gas from |
117049 | 17632 | nitrate | - | respiration |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | + | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | + | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | + | fermentation |
68379 | 28087 | glycogen | - | fermentation |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
117049 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
68368 | 15688 | acetoin | + | ||
68368 | 35581 | indole | - | ||
117049 | 15688 | acetoin | - | ||
117049 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | gelatinase | - | |
68379 | urease | + | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
117049 | oxidase | - | |
117049 | beta-galactosidase | - | 3.2.1.23 |
117049 | alcohol dehydrogenase | - | 1.1.1.1 |
117049 | gelatinase | - | |
117049 | amylase | - | |
117049 | DNase | - | |
117049 | caseinase | - | 3.4.21.50 |
117049 | catalase | + | 1.11.1.6 |
117049 | tween esterase | + | |
117049 | gamma-glutamyltransferase | - | 2.3.2.2 |
117049 | lecithinase | - | |
117049 | lysine decarboxylase | - | 4.1.1.18 |
117049 | ornithine decarboxylase | - | 4.1.1.17 |
117049 | phenylalanine ammonia-lyase | + | 4.3.1.24 |
117049 | tryptophan deaminase | - | |
117049 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19562 | - | - | +/- | + | - | - | + | - | - | + | - | + | - | - | - | - | - | + | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19562 | + | - | - | - | + | + | + | - | - | + | + | - | - | - | + | + | - | - | - | |
117049 | + | + | + | - | + | - | - | - | - | + | + | - | - | - | + | - | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
19562 | - | + | + | - | + | - | + | - | - | + | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
117049 | - | - | - | - | - | - | - | - | - | - | + | + | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
117049 | + | + | - | + | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | + | - | - | - | + | + | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
10903 | sputum of woman with cavitary disease of both upper lungs |
67770 | Sputa of patients with pulmonary disease |
117049 | Human, Sputum |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | ||
#Host | #Human | #Female |
#Host Body-Site | #Oral cavity and airways | #Lung |
#Host Body Product | #Fluids | #Sputum |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
10903 | 2 | Risk group (German classification) |
19562 | 2 | Risk group (German classification) |
117049 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Gordonia bronchialis clone C2 16S ribosomal RNA gene, partial sequence | AY262331 | 504 | ena | 526226 |
20218 | Gordona bronchialis partial 16S rRNA | X53201 | 798 | ena | 526226 |
20218 | G.bronchialis 16S rRNA gene | X75903 | 1331 | ena | 526226 |
20218 | G.bronchialis (DSM 43247) 16S rRNA gene | X79287 | 1472 | ena | 526226 |
67770 | G.bronchialis 16S rRNA gene (CIP 1780.88T) | X81919 | 1393 | ena | 2054 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Gordonia bronchialis DSM 43247 | GCA_000024785 | complete | ncbi | 526226 |
66792 | Gordonia bronchialis DSM 43247 | 526226.8 | complete | patric | 526226 |
66792 | Gordonia bronchialis DSM 43247 | 526226.15 | plasmid | patric | 526226 |
66792 | Gordonia bronchialis strain NCTC10667 | 2054.5 | wgs | patric | 2054 |
66792 | Gordonia bronchialis 3410, DSM 43247 | 646311932 | complete | img | 526226 |
66792 | Gordonia bronchialis NCTC 10667 | 2854968586 | draft | img | 2054 |
67770 | Gordonia bronchialis NCTC10667 | GCA_900450805 | contig | ncbi | 2054 |
GC content
@ref | GC-content | method |
---|---|---|
67770 | 67.1 | genome sequence analysis |
67770 | 65 | thermal denaturation, midpoint method (Tm) |
67770 | 65.5 | thermal denaturation, midpoint method (Tm) |
67770 | 67.04 | genome sequence analysis |
67770 | 65.9 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 82 | no |
motile | no | 94.349 | no |
flagellated | no | 98.283 | no |
gram-positive | yes | 88.107 | no |
anaerobic | no | 99.431 | no |
aerobic | yes | 88.48 | no |
halophile | no | 92.015 | no |
spore-forming | no | 84.65 | yes |
thermophile | no | 98.446 | no |
glucose-util | yes | 89.801 | yes |
glucose-ferment | no | 84.334 | yes |
External links
@ref: 10903
culture collection no.: DSM 43247, ATCC 25592, JCM 3198, KCC A-0198, NCTC 10667, BCRC 13721, CCM 2631, CCUG 20989, CCUG 34317, CCUG 34956, CIP 100847, IFM 0150, IFO 16047, IMET 7370, IMSNU 22088, JCM 3231, KCTC 3076, LMG 5355, NBRC 16047, PCM 2167, VKM Ac-956
straininfo link
- @ref: 79818
- straininfo: 2980
literature
topic | Pubmed-ID | title | authors | journal | year | mesh | topic2 | DOI |
---|---|---|---|---|---|---|---|---|
Phylogeny | 16400987 | [Isolation and comparative analysis of glycolipid fractions in bifidobacteria]. | Novik GI, Astapovich NI, Grzegorzewicz A, Gamian A | Mikrobiologiia | 2005 | Bifidobacterium/*chemistry, Chromatography, Thin Layer, Glycolipids/*analysis/isolation & purification | Enzymology | |
Phylogeny | 17012545 | Gordonia defluvii sp. nov., an actinomycete isolated from activated sludge foam. | Soddell JA, Stainsby FM, Eales KL, Seviour RJ, Goodfellow M | Int J Syst Evol Microbiol | 2006 | Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Genotype, Gordonia Bacterium/chemistry/*classification/genetics/*isolation & purification, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology | Genetics | 10.1099/ijs.0.64034-0 |
Phylogeny | 30994431 | Gordonia sediminis sp. nov., an actinomycete isolated from mangrove sediment. | Sangkanu S, Suriyachadkun C, Phongpaichit S | Int J Syst Evol Microbiol | 2019 | Actinobacteria/genetics, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Gordonia Bacterium/*classification/isolation & purification, Mycolic Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizophoraceae/*microbiology, Sequence Analysis, DNA, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome | 10.1099/ijsem.0.003399 |
Phylogeny | 32667871 | Gordonia mangrovi sp. nov., a novel actinobacterium isolated from mangrove soil in Hainan. | Xie Y, Zhou S, Xu Y, Wu W, Xia W, Zhang R, Huang D, Huang X | Int J Syst Evol Microbiol | 2020 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Gordonia Bacterium/*classification/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry | Transcriptome | 10.1099/ijsem.0.004310 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
10903 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43247) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43247 | |||
19562 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM43247.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
40091 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/12357 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
79818 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID2980.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
117049 | Curators of the CIP | Collection of Institut Pasteur (CIP 100847) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20100847 |