Strain identifier
BacDive ID: 10489
Type strain:
Species: Neisseria macacae
Strain Designation: M-740, W1
Strain history: CIP <- 1989, M.J. Barrett, Leicester Univ., UK: strain W1 <- N.A. Vedros: strain M-740
NCBI tax ID(s): 997348 (strain), 496 (species)
General
@ref: 7948
BacDive-ID: 10489
DSM-Number: 19175
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Neisseria macacae M-740 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from oropharynx of Rhesus monkey.
NCBI tax id
NCBI tax id | Matching level |
---|---|
496 | species |
997348 | strain |
strain history
@ref | history |
---|---|
7948 | <- CIP <- M. J. Barrett <- N. A. Vedros; M-740 |
120728 | CIP <- 1989, M.J. Barrett, Leicester Univ., UK: strain W1 <- N.A. Vedros: strain M-740 |
doi: 10.13145/bacdive10489.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Neisseriales
- family: Neisseriaceae
- genus: Neisseria
- species: Neisseria macacae
- full scientific name: Neisseria macacae Vedros et al. 1983
@ref: 7948
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Neisseriales
family: Neisseriaceae
genus: Neisseria
species: Neisseria macacae
full scientific name: Neisseria macacae Vedros et al. 1983
strain designation: M-740, W1
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.985
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
7948 | COLUMBIA BLOOD AGAR (DSMZ Medium 429) | yes | https://mediadive.dsmz.de/medium/429 | Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base |
40612 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
120728 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7948 | positive | growth | 37 | mesophilic |
40612 | positive | growth | 30 | mesophilic |
55081 | positive | growth | 33-42 |
Physiology and metabolism
oxygen tolerance
- @ref: 55081
- oxygen tolerance: aerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.999
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68377 | 17634 | D-glucose | + | builds acid from |
68377 | 15824 | D-fructose | + | builds acid from |
68377 | 17306 | maltose | + | builds acid from |
68377 | 18257 | ornithine | - | degradation |
68377 | 16199 | urea | - | hydrolysis |
68377 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68377 | tryptophan deaminase | - | 4.1.99.1 |
68377 | proline-arylamidase | + | 3.4.11.5 |
68377 | alkaline phosphatase | - | 3.1.3.1 |
68377 | lipase | - | |
68377 | urease | - | 3.5.1.5 |
68377 | ornithine decarboxylase | - | 4.1.1.17 |
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
7948 | + | + | + | + | - | - | - | - | - | + | + | - | - |
7948 | - | + | + | + | + | - | - | - | - | - | + | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
7948 | oropharynx of Rhesus monkey |
55081 | Rhesus monkey oropharynx |
120728 | Animal, Oropharynx of Rhesus monkey, Macaca mulatta |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Primates |
#Host Body-Site | #Oral cavity and airways |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
7948 | 1 | Risk group (German classification) |
120728 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Neisseria macaca 16S ribosomal RNA | L06169 | 1473 | ena | 997348 |
7948 | Neisseria macacae 16S rRNA gene, partial | AJ247243 | 457 | ena | 997348 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Neisseria macacae ATCC 33926 | 997348.4 | wgs | patric | 997348 |
66792 | Neisseria macacae ATCC 33926 | 651324075 | draft | img | 997348 |
66792 | Neisseria macacae ATCC 33926 | GCA_022749495 | complete | ncbi | 997348 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 83 | no |
flagellated | no | 91.767 | no |
gram-positive | no | 98.452 | no |
anaerobic | no | 97.604 | yes |
aerobic | no | 96.054 | no |
halophile | no | 78.503 | no |
spore-forming | no | 96.985 | no |
motile | no | 87.293 | no |
glucose-ferment | no | 84.751 | no |
thermophile | no | 99.571 | yes |
glucose-util | yes | 66.388 | no |
External links
@ref: 7948
culture collection no.: DSM 19175, ATCC 33926, CCUG 41451, CIP 103346, CCUG 24962
straininfo link
- @ref: 79766
- straininfo: 40767
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
7948 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19175) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19175 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
40612 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15133 | ||||
55081 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 41451) | https://www.ccug.se/strain?id=41451 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68377 | Automatically annotated from API NH | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
79766 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID40767.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120728 | Curators of the CIP | Collection of Institut Pasteur (CIP 103346) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103346 |