Strain identifier

BacDive ID: 10486

Type strain: Yes

Species: Neisseria perflava

Strain history: CIP <- 1973, ATCC <- S.E. Branham: strain 7078, Neisseria perflava

NCBI tax ID(s): 33053 (species)

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General

@ref: 7328

BacDive-ID: 10486

DSM-Number: 18009

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, coccus-shaped, human pathogen

description: Neisseria perflava CCUG 17915 is an obligate aerobe, mesophilic, Gram-negative human pathogen of the family Neisseriaceae.

NCBI tax id

  • NCBI tax id: 33053
  • Matching level: species

strain history

@refhistory
7328<- CIP <- ATCC <- S. E. Branham
121677CIP <- 1973, ATCC <- S.E. Branham: strain 7078, Neisseria perflava

doi: 10.13145/bacdive10486.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Neisseriaceae
  • genus: Neisseria
  • species: Neisseria perflava
  • full scientific name: Neisseria perflava Bergey et al. 1923 (Approved Lists 1980)

@ref: 7328

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Neisseriales

family: Neisseriaceae

genus: Neisseria

species: Neisseria perflava

full scientific name: Neisseria perflava Bergey et al. 1923

type strain: yes

Morphology

cell morphology

  • @ref: 121677
  • gram stain: negative
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 121677
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7328BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
7328TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
7328COLUMBIA BLOOD AGAR (DSMZ Medium 429)yeshttps://mediadive.dsmz.de/medium/429Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
37358MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
121677CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
7328positivegrowth37mesophilic
37358positivegrowth37mesophilic
121677positivegrowth30mesophilic
121677nogrowth22psychrophilic
121677nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 121677
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
121677D-fructose+degradation15824
121677D-glucose+degradation17634
121677D-mannose-degradation16024
121677lactose-degradation17716
121677maltose+degradation17306
121677sucrose+degradation17992
121677nitrate-reduction17632
121677nitrite+builds gas from16301
121677nitrite+reduction16301
121677tributyrin-hydrolysis35020
68377D-glucose+builds acid from17634
68377D-fructose+builds acid from15824
68377maltose+builds acid from17306
68377sucrose+builds acid from17992
68377ornithine-degradation18257
68377urea-hydrolysis16199
68377tryptophan-energy source27897

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
12167735581indoleno
121677polysaccharidesyes

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase+3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
121677oxidase+
121677alcohol dehydrogenase-1.1.1.1
121677DNase-
121677catalase+1.11.1.6
121677lysine decarboxylase-4.1.1.18
121677ornithine decarboxylase-4.1.1.17
121677urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121677--------------------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121677-------------------------------------------------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
7328-++++-----+--

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
7328yes, in single cases1Risk group (German classification)
1216771Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7328
  • description: Neisseria perflava 16S rRNA gene, partial
  • accession: AJ247246
  • length: 457
  • database: ena
  • NCBI tax ID: 33053

Genome sequences

  • @ref: 66792
  • description: Neisseria perflava CCUG 17915
  • accession: GCA_023472875
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 33053

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno92.978no
gram-positiveno97.974no
anaerobicno96.711no
aerobicno95.095no
halophileno76.672no
spore-formingno97.568no
motileno87.499no
glucose-fermentno82.923no
thermophileno99.21yes
glucose-utilyes71.345no

External links

@ref: 7328

culture collection no.: CCUG 17915, LMG 5284, DSM 18009, ATCC 10555, CIP 73.11

straininfo link

  • @ref: 79763
  • straininfo: 3634

Reference

@idauthorscataloguedoi/urltitle
7328Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18009)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18009
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
37358Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10663
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68377Automatically annotated from API NH
68382Automatically annotated from API zym
79763Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3634.1StrainInfo: A central database for resolving microbial strain identifiers
121677Curators of the CIPCollection of Institut Pasteur (CIP 73.11)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2073.11