Strain identifier
BacDive ID: 10482
Type strain:
Species: Neisseria elongata
Strain history: CIP <- 1972, M. Piéchaud, Inst. Pasteur, Paris, France <- ATCC, Neisseria elongata <- E. Holten, Oslo, Norway
NCBI tax ID(s): 495 (species)
General
@ref: 7154
BacDive-ID: 10482
DSM-Number: 17712
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, human pathogen
description: Neisseria elongata DSM 17712 is a microaerophile, mesophilic human pathogen that was isolated from pharynx of healthy adult.
NCBI tax id
- NCBI tax id: 495
- Matching level: species
strain history
@ref | history |
---|---|
7154 | <- CCUG <- K. Bovre |
119013 | CIP <- 1972, M. Piéchaud, Inst. Pasteur, Paris, France <- ATCC, Neisseria elongata <- E. Holten, Oslo, Norway |
doi: 10.13145/bacdive10482.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Neisseriales
- family: Neisseriaceae
- genus: Neisseria
- species: Neisseria elongata
- full scientific name: Neisseria elongata Bøvre and Holten 1970 (Approved Lists 1980)
@ref: 7154
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Neisseriales
family: Neisseriaceae
genus: Neisseria
species: Neisseria elongata
full scientific name: Neisseria elongata Bøvre and Holten 1970
type strain: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
7154 | COLUMBIA BLOOD AGAR (DSMZ Medium 429) | yes | https://mediadive.dsmz.de/medium/429 | Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base |
7154 | TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium545.pdf | |
37706 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
119013 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7154 | positive | growth | 35 | mesophilic |
37706 | positive | growth | 30 | mesophilic |
7154 | positive | growth | 37 | mesophilic |
7154 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 7154
- oxygen tolerance: microaerophile
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68377 | 17634 | D-glucose | - | builds acid from |
68377 | 15824 | D-fructose | - | builds acid from |
68377 | 17306 | maltose | - | builds acid from |
68377 | 17992 | sucrose | - | builds acid from |
68377 | 18257 | ornithine | - | degradation |
68377 | 16199 | urea | - | hydrolysis |
68377 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68377 | tryptophan deaminase | - | 4.1.99.1 |
68377 | gamma-glutamyltransferase | - | 2.3.2.2 |
68377 | alkaline phosphatase | - | 3.1.3.1 |
68377 | lipase | - | |
68377 | urease | - | 3.5.1.5 |
68377 | ornithine decarboxylase | - | 4.1.1.17 |
68377 | beta-lactamase | - | 3.5.2.6 |
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
7154 | - | - | - | - | - | - | - | - | - | - | + | - | - |
7154 | - | - | - | - | - | - | - | - | - | + | - | - | - |
7154 | - | - | - | - | - | - | - | - | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | isolation date |
---|---|---|---|---|---|
7154 | pharynx of healthy adult | Norway | NOR | Europe | |
119013 | Healthy man, pharynx | Norway | NOR | Europe | 1969 |
isolation source categories
- Cat1: #Host Body-Site
- Cat2: #Oral cavity and airways
taxonmaps
- @ref: 69479
- File name: preview.99_2164.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15355;96_42;97_1391;98_1690;99_2164&stattab=map
- Last taxonomy: Neisseria elongata subclade
- 16S sequence: L06171
- Sequence Identity:
- Total samples: 26262
- soil counts: 628
- aquatic counts: 904
- animal counts: 24596
- plant counts: 134
Safety information
risk assessment
@ref | pathogenicity human | biosafety level | biosafety level comment |
---|---|---|---|
7154 | yes, in single cases | 1 | Risk group (German classification) |
119013 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Neisseria elongata 16S rRNA gene, partial | AJ247252 | 457 | ena | 214482 |
7154 | Neisseria elongata subsp. elongata 16S ribosomal RNA gene, partial sequence | L06171 | 1476 | ena | 214482 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Neisseria elongata NCTC10660 | GCA_900453895 | contig | ncbi | 495 |
66792 | Neisseria elongata subsp. elongata ATCC 25295 | GCA_900113545 | scaffold | ncbi | 214482 |
66792 | Neisseria elongata strain NCTC10660 | 495.32 | wgs | patric | 495 |
66792 | Neisseria elongata subsp. elongata strain ATCC 25295 | 214482.5 | wgs | patric | 214482 |
66792 | Neisseria elongata ATCC 25295 | 2675903696 | draft | img | 214482 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 86.736 | no |
flagellated | no | 92.541 | no |
gram-positive | no | 98.404 | no |
anaerobic | no | 95.824 | yes |
aerobic | no | 95.378 | yes |
halophile | no | 80.555 | no |
spore-forming | no | 96.766 | no |
glucose-ferment | no | 91.306 | no |
thermophile | no | 97.418 | no |
glucose-util | yes | 57.091 | no |
External links
@ref: 7154
culture collection no.: DSM 17712, ATCC 25295, CCUG 2130A, CIP 72.27, LMG 5124, NCTC 10660, CCUG 2043
straininfo link
- @ref: 79759
- straininfo: 389282
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
7154 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17712) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17712 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
37706 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/10648 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68377 | Automatically annotated from API NH | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
79759 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID389282.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119013 | Curators of the CIP | Collection of Institut Pasteur (CIP 72.27) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2072.27 |