Strain identifier

BacDive ID: 10481

Type strain: Yes

Species: Neisseria weaveri

Strain Designation: ISL775/91, CNPM 10

Strain history: CIP <- 1994, F. Escande, Inst. Pasteur, Paris, France: strain CNPM 10 <- 1994, CCUG <- 1974, Gen. Diagn. Dept., Göteborg, Sweden, Neisseria parelongata

NCBI tax ID(s): 1051985 (strain), 28091 (species)

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General

@ref: 7129

BacDive-ID: 10481

DSM-Number: 17688

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Neisseria weaveri ISL775/91 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from dog's ear.

NCBI tax id

NCBI tax idMatching level
28091species
1051985strain

strain history

@refhistory
7129<- CCUG <- E. Falsen
123918CIP <- 1994, F. Escande, Inst. Pasteur, Paris, France: strain CNPM 10 <- 1994, CCUG <- 1974, Gen. Diagn. Dept., Göteborg, Sweden, Neisseria parelongata

doi: 10.13145/bacdive10481.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Neisseriaceae
  • genus: Neisseria
  • species: Neisseria weaveri
  • full scientific name: Neisseria weaveri Holmes et al. 1993

  • synonyms

    • @ref: 20215
    • synonym: Neisseria weaveri

@ref: 7129

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Neisseriales

family: Neisseriaceae

genus: Neisseria

species: Neisseria weaveri

full scientific name: Neisseria weaveri Holmes et al. 1993 emend. Yi and Chun 2015

strain designation: ISL775/91, CNPM 10

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.996
123918negativerod-shapedno

colony morphology

  • @ref: 123918
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7129TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
7129COLUMBIA BLOOD AGAR (DSMZ Medium 429)yeshttps://mediadive.dsmz.de/medium/429Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
35002MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
123918CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
123918CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
7129positivegrowth37mesophilic
35002positivegrowth30mesophilic
44702positivegrowth30-42
123918positivegrowth22-37
123918nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
44702aerobe
123918obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.999

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12391817632nitrate-reduction
12391816301nitrite+reduction
12391835020tributyrin-hydrolysis
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

antibiotic resistance

  • @ref: 123918
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
12391835581indoleno
123918polysaccharidesno

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
123918oxidase+
123918beta-galactosidase-3.2.1.23
123918alcohol dehydrogenase-1.1.1.1
123918DNase+
123918catalase+1.11.1.6
123918gamma-glutamyltransferase-2.3.2.2
123918lysine decarboxylase-4.1.1.18
123918ornithine decarboxylase-4.1.1.17
123918phenylalanine ammonia-lyase-4.3.1.24
123918urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382valine arylamidase-
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
44702-----+-+--++--------
123918--------------------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
44702-+--------+--
7129++/------+/--+---
7129-++/------+/--+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123918---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
7129dog's earGöteborgSwedenSWEEurope
44702Dog earGöteborgSwedenSWEEurope1974-10-01
123918Human, Wound after dog biteGöteborgSwedenSWEEurope1974

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Canidae (Dog)
#Host Body-Site#Organ#Ear

taxonmaps

  • @ref: 69479
  • File name: preview.99_1483.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15355;96_42;97_98;98_1169;99_1483&stattab=map
  • Last taxonomy: Neisseria weaveri
  • 16S sequence: KM610326
  • Sequence Identity:
  • Total samples: 46
  • soil counts: 1
  • aquatic counts: 6
  • animal counts: 39

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
71292Risk group (German classification)
1239181Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Neisseria weaveri partial 16S rRNA gene, strain 8142HF5583611514ena28091
7129Neisseria weaveri LMG 5135 16S ribosomal RNA gene, partial sequenceKM6103261534ena1051985

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Neisseria weaveri NCTC12742GCA_900638685completencbi28091
66792Neisseria weaveri LMG 5135GCA_000224255contigncbi1051985
66792Neisseria weaveri LMG 51351051985.3wgspatric1051985
66792Neisseria weaveri strain NCTC1274228091.9completepatric28091
66792Neisseria weaveri LMG 51352519899601draftimg1051985
66792Neisseria weaveri NCTC127422869912574completeimg28091

GC content

  • @ref: 7129
  • GC-content: 49

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno94.058no
gram-positiveno98.984no
anaerobicno97.443yes
aerobicno91.013yes
halophileno68.057no
spore-formingno96.918no
thermophileno98.946yes
glucose-utilno50.831no
motileno84.578no
glucose-fermentno91.452no

External links

@ref: 7129

culture collection no.: DSM 17688, ATCC 51410, CCM 4587, CCUG 4007, CIP 103940, LMG 5135, NCTC 12742, ATCC 51223

straininfo link

  • @ref: 79758
  • straininfo: 3635

literature

  • topic: Phylogeny
  • Pubmed-ID: 8240951
  • title: Neisseria weaveri sp. nov. (formerly CDC group M-5), from dog bite wounds of humans.
  • authors: Holmes B, Costas M, On SL, Vandamme P, Falsen E, Kersters K
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-43-4-687
  • year: 1993
  • mesh: Animals, Bacterial Proteins/analysis, Base Composition, Bites and Stings/*microbiology, Centers for Disease Control and Prevention, U.S., DNA, Bacterial/genetics, *Dogs, Humans, Neisseria/chemistry/*classification/genetics/metabolism, Nucleic Acid Hybridization, Phylogeny, United States
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7129Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17688)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17688
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35002Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15793
44702Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 4007)https://www.ccug.se/strain?id=4007
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
79758Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3635.1StrainInfo: A central database for resolving microbial strain identifiers
123918Curators of the CIPCollection of Institut Pasteur (CIP 103940)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103940