Strain identifier

BacDive ID: 10480

Type strain: Yes

Species: Neisseria flavescens

Strain Designation: N155, 34A

Strain history: CIP <- 1973, ATCC <- S.E. Branham: strain N155 <- Chicago Hlth. Dept., USA: strain 34A

NCBI tax ID(s): 484 (species)

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General

@ref: 7097

BacDive-ID: 10480

DSM-Number: 17633

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Neisseria flavescens N155 is a mesophilic, Gram-negative bacterium that was isolated from human cerebrospinal fluid; fatal case of meningitis.

NCBI tax id

  • NCBI tax id: 484
  • Matching level: species

strain history

@refhistory
7097<- CIP <- ATCC <- S. E. Braham; N155 <- Chicago Dept. Hlth
119372CIP <- 1973, ATCC <- S.E. Branham: strain N155 <- Chicago Hlth. Dept., USA: strain 34A

doi: 10.13145/bacdive10480.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Neisseriaceae
  • genus: Neisseria
  • species: Neisseria flavescens
  • full scientific name: Neisseria flavescens Branham 1930 (Approved Lists 1980)

@ref: 7097

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Neisseriales

family: Neisseriaceae

genus: Neisseria

species: Neisseria flavescens

full scientific name: Neisseria flavescens Branham 1930

strain designation: N155, 34A

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.997

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7097BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
7097COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
37707MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and NeisseriayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
119372CIP Medium 10yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10

culture temp

@refgrowthtypetemperaturerange
7097positivegrowth37mesophilic
37707positivegrowth37mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377proline-arylamidase+3.4.11.5
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
7097+------+-++--
7097-+/---+/----+/--++-
7097-+------+-++-
7097-+--+-----++-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
7097human cerebrospinal fluid; fatal case of meningitisChicagoUSAUSANorth America
119372Human, Cerebrospinal fluid, fatal case of meningitisChicago, IllinoisUnited States of AmericaUSANorth America1928

isolation source categories

Cat1Cat2Cat3
#Infection#Disease#Meningitis
#Host#Human
#Host Body Product#Fluids#Cerebrospinal fluid

taxonmaps

  • @ref: 69479
  • File name: preview.99_1797.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15355;96_42;97_98;98_107;99_1797&stattab=map
  • Last taxonomy: Neisseria
  • 16S sequence: AB904034
  • Sequence Identity:
  • Total samples: 58887
  • soil counts: 1606
  • aquatic counts: 1673
  • animal counts: 54981
  • plant counts: 627

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
70972Risk group (German classification)
1193721Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Neisseria flavescens gene for 16S ribosomal RNA, partial sequence, strain: NFL_ATCC13120AB9040341085ena484
7097Neisseria flavescens 16S ribosomal RNAL061681486ena484

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Neisseria flavescens ATCC 13120GCA_005221285completencbi484
66792Neisseria flavescens NCTC8263GCA_900453805contigncbi484
66792Neisseria flavescens strain ATCC 13120484.274completepatric484
66792Neisseria flavescens strain NCTC8263484.40wgspatric484
66792Neisseria flavescens ATCC 131202877235250completeimg484

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno88.563no
flagellatedno93.239no
gram-positiveno98.528no
anaerobicno96.736no
aerobicno96.33no
halophileno71.226no
spore-formingno96.875no
glucose-utilyes67.218no
thermophileno98.562yes
glucose-fermentno85.293no

External links

@ref: 7097

culture collection no.: DSM 17633, ATCC 13120, CCUG 345, CIP 73.15, LMG 5297, NCTC 8263

straininfo link

  • @ref: 79757
  • straininfo: 11038

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7097Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17633)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17633
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37707Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10667
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
79757Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID11038.1StrainInfo: A central database for resolving microbial strain identifiers
119372Curators of the CIPCollection of Institut Pasteur (CIP 73.15)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2073.15