Strain identifier
BacDive ID: 10480
Type strain:
Species: Neisseria flavescens
Strain Designation: N155, 34A
Strain history: CIP <- 1973, ATCC <- S.E. Branham: strain N155 <- Chicago Hlth. Dept., USA: strain 34A
NCBI tax ID(s): 484 (species)
General
@ref: 7097
BacDive-ID: 10480
DSM-Number: 17633
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Neisseria flavescens N155 is a mesophilic, Gram-negative bacterium that was isolated from human cerebrospinal fluid; fatal case of meningitis.
NCBI tax id
- NCBI tax id: 484
- Matching level: species
strain history
@ref | history |
---|---|
7097 | <- CIP <- ATCC <- S. E. Braham; N155 <- Chicago Dept. Hlth |
119372 | CIP <- 1973, ATCC <- S.E. Branham: strain N155 <- Chicago Hlth. Dept., USA: strain 34A |
doi: 10.13145/bacdive10480.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Neisseriales
- family: Neisseriaceae
- genus: Neisseria
- species: Neisseria flavescens
- full scientific name: Neisseria flavescens Branham 1930 (Approved Lists 1980)
@ref: 7097
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Neisseriales
family: Neisseriaceae
genus: Neisseria
species: Neisseria flavescens
full scientific name: Neisseria flavescens Branham 1930
strain designation: N155, 34A
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.997
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
7097 | BHI MEDIUM (DSMZ Medium 215) | yes | https://mediadive.dsmz.de/medium/215 | Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water |
7097 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
37707 | MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml) | |
119372 | CIP Medium 10 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7097 | positive | growth | 37 | mesophilic |
37707 | positive | growth | 37 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 100 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68377 | 15824 | D-fructose | - | builds acid from |
68377 | 17306 | maltose | - | builds acid from |
68377 | 18257 | ornithine | - | degradation |
68377 | 16199 | urea | - | hydrolysis |
68377 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68377 | tryptophan deaminase | - | 4.1.99.1 |
68377 | proline-arylamidase | + | 3.4.11.5 |
68377 | urease | - | 3.5.1.5 |
68377 | ornithine decarboxylase | - | 4.1.1.17 |
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
7097 | + | - | - | - | - | - | - | + | - | + | + | - | - |
7097 | - | +/- | - | - | +/- | - | - | - | +/- | - | + | + | - |
7097 | - | + | - | - | - | - | - | - | + | - | + | + | - |
7097 | - | + | - | - | + | - | - | - | - | - | + | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|
7097 | human cerebrospinal fluid; fatal case of meningitis | Chicago | USA | USA | North America | |
119372 | Human, Cerebrospinal fluid, fatal case of meningitis | Chicago, Illinois | United States of America | USA | North America | 1928 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Disease | #Meningitis |
#Host | #Human | |
#Host Body Product | #Fluids | #Cerebrospinal fluid |
taxonmaps
- @ref: 69479
- File name: preview.99_1797.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15355;96_42;97_98;98_107;99_1797&stattab=map
- Last taxonomy: Neisseria
- 16S sequence: AB904034
- Sequence Identity:
- Total samples: 58887
- soil counts: 1606
- aquatic counts: 1673
- animal counts: 54981
- plant counts: 627
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
7097 | 2 | Risk group (German classification) |
119372 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Neisseria flavescens gene for 16S ribosomal RNA, partial sequence, strain: NFL_ATCC13120 | AB904034 | 1085 | ena | 484 |
7097 | Neisseria flavescens 16S ribosomal RNA | L06168 | 1486 | ena | 484 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Neisseria flavescens ATCC 13120 | GCA_005221285 | complete | ncbi | 484 |
66792 | Neisseria flavescens NCTC8263 | GCA_900453805 | contig | ncbi | 484 |
66792 | Neisseria flavescens strain ATCC 13120 | 484.274 | complete | patric | 484 |
66792 | Neisseria flavescens strain NCTC8263 | 484.40 | wgs | patric | 484 |
66792 | Neisseria flavescens ATCC 13120 | 2877235250 | complete | img | 484 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 88.563 | no |
flagellated | no | 93.239 | no |
gram-positive | no | 98.528 | no |
anaerobic | no | 96.736 | no |
aerobic | no | 96.33 | no |
halophile | no | 71.226 | no |
spore-forming | no | 96.875 | no |
glucose-util | yes | 67.218 | no |
thermophile | no | 98.562 | yes |
glucose-ferment | no | 85.293 | no |
External links
@ref: 7097
culture collection no.: DSM 17633, ATCC 13120, CCUG 345, CIP 73.15, LMG 5297, NCTC 8263
straininfo link
- @ref: 79757
- straininfo: 11038
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
7097 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17633) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17633 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
37707 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/10667 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68377 | Automatically annotated from API NH | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
79757 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID11038.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119372 | Curators of the CIP | Collection of Institut Pasteur (CIP 73.15) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2073.15 |