Strain identifier
BacDive ID: 10478
Type strain:
Species: Neisseria subflava
Strain Designation: 37
Strain history: CIP <- 1989, S.J. Barrett, Leicester Univ., UK: strain U37, Neisseria subflava var. flava
NCBI tax ID(s): 28449 (species)
General
@ref: 7083
BacDive-ID: 10478
DSM-Number: 17610
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative
description: Neisseria subflava 37 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from throat.
NCBI tax id
- NCBI tax id: 28449
- Matching level: species
strain history
@ref | history |
---|---|
7083 | <- CIP; CIP 103343 <- S. J. Barrett, University of Leicester; 37 |
40536 | 1989, S.J. Barrett, Leicester Univ., UK: strain U37, Neisseria subflava var. flava |
123344 | CIP <- 1989, S.J. Barrett, Leicester Univ., UK: strain U37, Neisseria subflava var. flava |
doi: 10.13145/bacdive10478.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Neisseriales
- family: Neisseriaceae
- genus: Neisseria
- species: Neisseria subflava
- full scientific name: Neisseria subflava (Flügge 1886) Trevisan 1889 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Micrococcus subflavus
@ref: 7083
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Neisseriales
family: Neisseriaceae
genus: Neisseria
species: Neisseria subflava
full scientific name: Neisseria subflava (Flügge 1886) Trevisan 1889
strain designation: 37
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape |
---|---|---|---|
69480 | negative | 99.996 | |
123344 | negative | coccus-shaped |
colony morphology
@ref | type of hemolysis | incubation period |
---|---|---|
7083 | gamma | 1-2 days |
123344 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
7083 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
40536 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
123344 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7083 | positive | growth | 30 | mesophilic |
40536 | positive | growth | 30 | mesophilic |
123344 | positive | growth | 30-41 | |
123344 | no | growth | 22 | psychrophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 123344
- oxygen tolerance: obligate aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 100 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
123344 | 17632 | nitrate | - | reduction |
123344 | 16301 | nitrite | + | reduction |
68377 | 18257 | ornithine | - | degradation |
68377 | 16199 | urea | - | hydrolysis |
68377 | 27897 | tryptophan | - | energy source |
antibiotic resistance
- @ref: 123344
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68377 | 35581 | indole | no |
123344 | 35581 | indole | no |
123344 | polysaccharides | no |
metabolite tests
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
7083 | catalase | + | 1.11.1.6 |
7083 | cytochrome-c oxidase | + | 1.9.3.1 |
68377 | tryptophan deaminase | - | 4.1.99.1 |
68377 | gamma-glutamyltransferase | - | 2.3.2.2 |
68377 | alkaline phosphatase | - | 3.1.3.1 |
68377 | lipase | - | |
68377 | urease | - | 3.5.1.5 |
68377 | ornithine decarboxylase | - | 4.1.1.17 |
123344 | oxidase | + | |
123344 | beta-galactosidase | + | 3.2.1.23 |
123344 | alcohol dehydrogenase | - | 1.1.1.1 |
123344 | amylase | - | |
123344 | DNase | - | |
123344 | catalase | + | 1.11.1.6 |
123344 | tween esterase | + | |
123344 | gamma-glutamyltransferase | - | 2.3.2.2 |
123344 | lecithinase | - | |
123344 | lysine decarboxylase | - | 4.1.1.18 |
123344 | ornithine decarboxylase | - | 4.1.1.17 |
123344 | urease | - | 3.5.1.5 |
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
7083 | + | - | + | - | - | - | - | - | - | + | - | - | - |
7083 | - | - | - | + | - | - | - | - | - | - | - | - | - |
7083 | - | + | - | + | - | - | - | - | - | - | + | - | - |
7083 | - | - | - | - | + | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | continent | geographic location | country | origin.country |
---|---|---|---|---|---|
7083 | throat | Europe | |||
47892 | Human throat | ||||
123344 | Human, Throat | Europe | England | United Kingdom | GBR |
isolation source categories
- Cat1: #Host Body-Site
- Cat2: #Oral cavity and airways
- Cat3: #Throat
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
7083 | 2 | Risk group (German classification) |
123344 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 7083
- description: Neisseria subflava 16S rRNA gene, partial
- accession: AJ247249
- length: 457
- database: ena
- NCBI tax ID: 28449
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Neisseria subflava ATCC 49275 | GCA_005221305 | complete | ncbi | 28449 |
66792 | Neisseria subflava strain ATCC 49275 | 28449.200 | complete | patric | 28449 |
66792 | Neisseria subflava ATCC 49275 | 2877215797 | complete | img | 28449 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 86.229 | no |
flagellated | no | 92.272 | no |
gram-positive | no | 98.631 | no |
anaerobic | no | 95.85 | no |
aerobic | no | 95.954 | no |
halophile | no | 74.224 | no |
spore-forming | no | 96.976 | no |
glucose-util | yes | 68.775 | no |
thermophile | no | 99.084 | yes |
glucose-ferment | no | 85.651 | no |
External links
@ref: 7083
culture collection no.: DSM 17610, ATCC 49275, CCUG 23930, CIP 103343, LMG 5313, NRL 30017, LMG 5921, CCM 4407
straininfo link
- @ref: 79755
- straininfo: 311042
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
7083 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17610) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17610 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
40536 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15130 | ||
47892 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 23930) | https://www.ccug.se/strain?id=23930 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
68377 | Automatically annotated from API NH | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
79755 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID311042.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
123344 | Curators of the CIP | Collection of Institut Pasteur (CIP 103343) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103343 |