Strain identifier

BacDive ID: 10478

Type strain: Yes

Species: Neisseria subflava

Strain Designation: 37

Strain history: CIP <- 1989, S.J. Barrett, Leicester Univ., UK: strain U37, Neisseria subflava var. flava

NCBI tax ID(s): 28449 (species)

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General

@ref: 7083

BacDive-ID: 10478

DSM-Number: 17610

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative

description: Neisseria subflava 37 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from throat.

NCBI tax id

  • NCBI tax id: 28449
  • Matching level: species

strain history

@refhistory
7083<- CIP; CIP 103343 <- S. J. Barrett, University of Leicester; 37
405361989, S.J. Barrett, Leicester Univ., UK: strain U37, Neisseria subflava var. flava
123344CIP <- 1989, S.J. Barrett, Leicester Univ., UK: strain U37, Neisseria subflava var. flava

doi: 10.13145/bacdive10478.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Neisseriaceae
  • genus: Neisseria
  • species: Neisseria subflava
  • full scientific name: Neisseria subflava (Flügge 1886) Trevisan 1889 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Micrococcus subflavus

@ref: 7083

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Neisseriales

family: Neisseriaceae

genus: Neisseria

species: Neisseria subflava

full scientific name: Neisseria subflava (Flügge 1886) Trevisan 1889

strain designation: 37

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shape
69480negative99.996
123344negativecoccus-shaped

colony morphology

@reftype of hemolysisincubation period
7083gamma1-2 days
123344

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7083COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
40536MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
123344CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
7083positivegrowth30mesophilic
40536positivegrowth30mesophilic
123344positivegrowth30-41
123344nogrowth22psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 123344
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12334417632nitrate-reduction
12334416301nitrite+reduction
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

antibiotic resistance

  • @ref: 123344
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
12334435581indoleno
123344polysaccharidesno

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
7083catalase+1.11.1.6
7083cytochrome-c oxidase+1.9.3.1
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
123344oxidase+
123344beta-galactosidase+3.2.1.23
123344alcohol dehydrogenase-1.1.1.1
123344amylase-
123344DNase-
123344catalase+1.11.1.6
123344tween esterase+
123344gamma-glutamyltransferase-2.3.2.2
123344lecithinase-
123344lysine decarboxylase-4.1.1.18
123344ornithine decarboxylase-4.1.1.17
123344urease-3.5.1.5

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
7083+-+------+---
7083---+---------
7083-+-+------+--
7083----+--------

Isolation, sampling and environmental information

isolation

@refsample typecontinentgeographic locationcountryorigin.country
7083throatEurope
47892Human throat
123344Human, ThroatEuropeEnglandUnited KingdomGBR

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Oral cavity and airways
  • Cat3: #Throat

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
70832Risk group (German classification)
1233441Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7083
  • description: Neisseria subflava 16S rRNA gene, partial
  • accession: AJ247249
  • length: 457
  • database: ena
  • NCBI tax ID: 28449

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Neisseria subflava ATCC 49275GCA_005221305completencbi28449
66792Neisseria subflava strain ATCC 4927528449.200completepatric28449
66792Neisseria subflava ATCC 492752877215797completeimg28449

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno86.229no
flagellatedno92.272no
gram-positiveno98.631no
anaerobicno95.85no
aerobicno95.954no
halophileno74.224no
spore-formingno96.976no
glucose-utilyes68.775no
thermophileno99.084yes
glucose-fermentno85.651no

External links

@ref: 7083

culture collection no.: DSM 17610, ATCC 49275, CCUG 23930, CIP 103343, LMG 5313, NRL 30017, LMG 5921, CCM 4407

straininfo link

  • @ref: 79755
  • straininfo: 311042

Reference

@idauthorscataloguedoi/urltitle
7083Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17610)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17610
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
40536Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15130
47892Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 23930)https://www.ccug.se/strain?id=23930
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
79755Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID311042.1StrainInfo: A central database for resolving microbial strain identifiers
123344Curators of the CIPCollection of Institut Pasteur (CIP 103343)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103343