Strain identifier

BacDive ID: 10469

Type strain: Yes

Species: Neisseria mucosa

Strain Designation: N 16 1959

Strain history: CIP <- 1959, M. Véron, Necker Hosp., Paris, France: strain N 16 1959

NCBI tax ID(s): 488 (species)

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General

@ref: 7084

BacDive-ID: 10469

DSM-Number: 17611

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Neisseria mucosa N 16 1959 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from sputum from a patient with bronchitis and nephrititis.

NCBI tax id

  • NCBI tax id: 488
  • Matching level: species

strain history

@refhistory
7084<- CIP <- M. Véron, Necker Hospital, Paris
376031959, M. Véron, Necker Hosp., Paris, France: strain N 16 1959
67770CCUG 26877 <-- CIP 59.51 <-- M. Véron N16.
121160CIP <- 1959, M. Véron, Necker Hosp., Paris, France: strain N 16 1959

doi: 10.13145/bacdive10469.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Neisseriaceae
  • genus: Neisseria
  • species: Neisseria mucosa
  • full scientific name: Neisseria mucosa Véron et al. 1959 (Approved Lists 1980)

@ref: 7084

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Neisseriales

family: Neisseriaceae

genus: Neisseria

species: Neisseria mucosa

full scientific name: Neisseria mucosa Véron et al. 1959

strain designation: N 16 1959

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.996

colony morphology

  • @ref: 7084
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7084COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
37603MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
121160CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
7084positivegrowth30mesophilic
37603positivegrowth30mesophilic
48586positivegrowth30-37mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 48586
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377proline-arylamidase+3.4.11.5
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
7084++++-----++--
7084-++++-----++-
7084-++++-----++-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7084sputum from a patient with bronchitis and nephrititisFranceFRAEurope
48586Human sputum,chronic bronchitis
67770Human sputum, chronic bronchitis
121160Human, Sputum, bronchitis and nephrititis

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Infection#Inflammation
#Infection#Patient
#Host Body Product#Fluids#Sputum

taxonmaps

  • @ref: 69479
  • File name: preview.99_284.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15355;96_42;97_98;98_240;99_284&stattab=map
  • Last taxonomy: Neisseria
  • 16S sequence: HF558371
  • Sequence Identity:
  • Total samples: 21523
  • soil counts: 433
  • aquatic counts: 644
  • animal counts: 20175
  • plant counts: 271

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
70842Risk group (German classification)
1211601Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Neisseria mucosa 16S rRNA gene, partialAJ247257457ena488
7084Neisseria mucosa partial 16S rRNA gene, type strain DSM 17611THG0053511537ena488
67770Neisseria mucosa gene for 16S ribosomal RNA, partial sequenceAB9107391502ena488
67770Neisseria mucosa partial 16S rRNA gene, strain N16HF5583711501ena488

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Neisseria mucosa ATCC 19696GCA_003028315completencbi488
66792Neisseria mucosa strain ATCC 19696488.19completepatric488
66792Neisseria mucosa ATCC 196962874897852completeimg488

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno92.612no
gram-positiveno98.134no
anaerobicno98.408no
halophileno75.922no
spore-formingno96.656no
glucose-utilyes69.479no
aerobicno93.939no
thermophileno99.349yes
motileno87.256no
glucose-fermentno85.958no

External links

@ref: 7084

culture collection no.: DSM 17611, ATCC 19696, CIP 59.51, NCTC 12978, CCUG 26877, JCM 12992

straininfo link

  • @ref: 79746
  • straininfo: 37075

literature

  • topic: Phylogeny
  • Pubmed-ID: 11230407
  • title: Diagnostics of neisseriaceae and moraxellaceae by ribosomal DNA sequencing: ribosomal differentiation of medical microorganisms.
  • authors: Harmsen D, Singer C, Rothganger J, Tonjum T, de Hoog GS, Shah H, Albert J, Frosch M
  • journal: J Clin Microbiol
  • DOI: 10.1128/JCM.39.3.936-942.2001
  • year: 2001
  • mesh: DNA, Ribosomal/*genetics, Databases, Factual, Genes, rRNA, Humans, Internet, Molecular Sequence Data, Moraxella/*classification/genetics/isolation & purification, Neisseriaceae/*classification/genetics/isolation & purification, Neisseriaceae Infections/*diagnosis/microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, *Sequence Analysis, DNA
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7084Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17611)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17611
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37603Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/9794
48586Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 26877)https://www.ccug.se/strain?id=26877
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
79746Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID37075.1StrainInfo: A central database for resolving microbial strain identifiers
121160Curators of the CIPCollection of Institut Pasteur (CIP 59.51)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2059.51