Strain identifier

BacDive ID: 10467

Type strain: Yes

Species: Neisseria lactamica

Strain history: CIP <- 1972, ATCC <- D. Hollis: strain NCDC A7515

NCBI tax ID(s): 546265 (strain), 486 (species)

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General

@ref: 1686

BacDive-ID: 10467

DSM-Number: 4691

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, human pathogen

description: Neisseria lactamica DSM 4691 is a microaerophile, mesophilic, Gram-negative human pathogen that was isolated from nasopharynx.

NCBI tax id

NCBI tax idMatching level
486species
546265strain

strain history

@refhistory
1686<- NCTC <- ATCC <- D. Hollis, NCDC A7515
120522CIP <- 1972, ATCC <- D. Hollis: strain NCDC A7515

doi: 10.13145/bacdive10467.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Neisseriaceae
  • genus: Neisseria
  • species: Neisseria lactamica
  • full scientific name: Neisseria lactamica corrig. Hollis et al. 1969 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Neisseria lactamicus

@ref: 1686

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Neisseriales

family: Neisseriaceae

genus: Neisseria

species: Neisseria lactamica

full scientific name: Neisseria lactamica Hollis et al. 1969

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.995
120522negativecoccus-shapedno

colony morphology

@reftype of hemolysisincubation period
1686gamma1-2 days
120522

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1686COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
42080MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
120522CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
1686positivegrowth37mesophilic
42080positivegrowth30mesophilic
120522positivegrowth30-37mesophilic
120522nogrowth22psychrophilic
120522nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
1686microaerophile
120522obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12052217632nitrate-reduction
12052216301nitrite-reduction
12052235020tributyrin-hydrolysis
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

antibiotic resistance

  • @ref: 120522
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
12052235581indoleno
120522polysaccharidesno

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
1686catalase+1.11.1.6
1686cytochrome-c oxidase+1.9.3.1
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377beta-galactosidase+3.2.1.23
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
120522oxidase+
120522beta-galactosidase+3.2.1.23
120522alcohol dehydrogenase-1.1.1.1
120522gelatinase-
120522DNase-
120522catalase+1.11.1.6
120522gamma-glutamyltransferase-2.3.2.2
120522lysine decarboxylase-4.1.1.18
120522ornithine decarboxylase-4.1.1.17
120522urease-3.5.1.5

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
1686+-+-----++---
1686+-+-----++---
1686+-+-----++---
1686+-+-----++--
1686-+-+-----++--
1686-+-+-----++--
1686-+-+-----++--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
1686nasopharynx
44859Human nose(NCTC)/nasopharynx(CIP)
120522Human, NasopharynxUnited States of AmericaUSANorth America1968

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Oral cavity and airways
  • Cat3: #Throat

taxonmaps

  • @ref: 69479
  • File name: preview.99_3493.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15355;96_42;97_2181;98_2676;99_3493&stattab=map
  • Last taxonomy: Neisseria lactamica subclade
  • 16S sequence: AJ239286
  • Sequence Identity:
  • Total samples: 384
  • soil counts: 1
  • aquatic counts: 14
  • animal counts: 369

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
1686yes, in single cases1Risk group (German classification)
1205221Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Neisseria lactamica 16S rRNA gene (partial), strain NCTC10617AJ2392861355ena486
20218Neisseria lactamica 16S rRNA gene, partialAJ247241457ena486
20218N.lactamica gene for 16S rRNAX74901712ena486
1686Human immunodeficiency virus type 1 partial RT gene, strain DRO20/M0AJ239266633ena12721

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Neisseria lactamica NCTC10617GCA_901482445completencbi486
66792Neisseria lactamica ATCC 23970GCA_000741965scaffoldncbi546265
66792Neisseria lactamica ATCC 23970GCA_000173995contigncbi546265
66792Neisseria lactamica ATCC 23970546265.5wgspatric546265
66792Neisseria lactamica ATCC 23970546265.8completepatric546265
66792Neisseria lactamica strain NCTC10617486.300completepatric486
66792Neisseria lactamica ATCC 239702609460158draftimg546265
66792Neisseria lactamica ATCC 239702562617168draftimg546265

GC content

  • @ref: 1686
  • GC-content: 53.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.468no
anaerobicno97.277yes
halophileno64.262no
spore-formingno96.652no
glucose-utilyes65.346no
thermophileno98.571yes
aerobicno95.846yes
motileno84.547no
flagellatedno91.523no
glucose-fermentno90.061no

External links

@ref: 1686

culture collection no.: DSM 4691, ATCC 23970, NCTC 10617, CCUG 5853, CIP 72.17, CCM 4401, NCDC A7515

straininfo link

  • @ref: 79744
  • straininfo: 3630

literature

  • Pubmed-ID: 25291770
  • title: Draft Genome Assembly of Neisseria lactamica Type Strain A7515.
  • authors: Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Chertkov O, Coyne SR, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.00951-14
  • year: 2014

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1686Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4691)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4691
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42080Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10636
44859Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 5853)https://www.ccug.se/strain?id=5853
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
79744Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3630.1StrainInfo: A central database for resolving microbial strain identifiers
120522Curators of the CIPCollection of Institut Pasteur (CIP 72.17)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2072.17