Strain identifier

BacDive ID: 10439

Type strain: Yes

Species: Aquaspirillum putridiconchylium

Strain history: CIP <- 2001, NCIMB <- Y. Terasaki, Spirillum putridiconchylium

NCBI tax ID(s): 181658 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4419

BacDive-ID: 10439

DSM-Number: 11557

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Aquaspirillum putridiconchylium DSM 11557 is a mesophilic, Gram-negative, motile bacterium that was isolated from putrid infusion of a freshwater shellfish.

NCBI tax id

  • NCBI tax id: 181658
  • Matching level: species

strain history

@refhistory
4419<- ATCC <- Y. Terasaki (Spirillum putridiconchylium)
122076CIP <- 2001, NCIMB <- Y. Terasaki, Spirillum putridiconchylium

doi: 10.13145/bacdive10439.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Chromobacteriaceae
  • genus: Aquaspirillum
  • species: Aquaspirillum putridiconchylium
  • full scientific name: Aquaspirillum putridiconchylium (Terasaki 1961) Hylemon et al. 1973 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Spirillum putridiconchylium

@ref: 4419

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Neisseriales

family: Chromobacteriaceae

genus: Aquaspirillum

species: Aquaspirillum putridiconchylium

full scientific name: Aquaspirillum putridiconchylium (Terasaki 1961) Hylemon et al. 1973

type strain: yes

Morphology

cell morphology

  • @ref: 122076
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4419HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428)yeshttps://mediadive.dsmz.de/medium/428Name: HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) Composition: Agar 19.802 g/l Na2HPO4 x 2 H2O 2.87129 g/l KH2PO4 2.27723 g/l D-Glucose 1.9802 g/l Na-lactate 0.990099 g/l Na-pyruvate 0.990099 g/l D-Mannitol 0.990099 g/l DL-Malate 0.990098 g/l Na-acetate 0.990098 g/l Yeast extract 0.990098 g/l NH4Cl 0.990098 g/l Disodium succinate 0.990098 g/l MgSO4 x 7 H2O 0.495049 g/l Ferric ammonium citrate 0.049505 g/l CaCl2 x 2 H2O 0.00990098 g/l NaVO3 x H2O 0.00495049 g/l Thiamine-HCl x 2 H2O 0.00247525 g/l Nicotinic acid 0.00247525 g/l Pyridoxine hydrochloride 0.00247525 g/l Calcium pantothenate 0.00247525 g/l H3BO3 0.00148515 g/l CoCl2 x 6 H2O 0.000990099 g/l Riboflavin 0.00049505 g/l ZnSO4 x 7 H2O 0.00049505 g/l MnCl2 x 4 H2O 0.000148515 g/l Na2MoO4 x 2 H2O 0.000148515 g/l NiCl2 x 6 H2O 9.90099e-05 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Vitamin B12 4.95049e-05 g/l Folic acid 9.90099e-06 g/l Biotin 4.9505e-06 g/l Distilled water
4419SPIRILLUM MEDIUM (DSMZ Medium 37)yeshttps://mediadive.dsmz.de/medium/37Name: SPIRILLUM MEDIUM (DSMZ Medium 37) Composition: Peptone 10.0 g/l (NH4)2SO4 1.0 g/l Succinic acid 1.0 g/l MgSO4 x 7 H2O 1.0 g/l FeCl3 x 6 H2O 0.002 g/l MnSO4 x H2O 0.002 g/l Distilled water
4419ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7)yeshttps://mediadive.dsmz.de/medium/7Name: ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7) Composition: Agar 15.0 g/l Yeast extract 1.0 g/l Peptone 1.0 g/l Glucose 1.0 g/l Distilled water
33106MEDIUM 14 - Williams and Rittenberg medium for Aquaspirillum genusyesDistilled water make up to (1000.000 ml);Agar (13.000 g);Yeast extract (3.000 g);Peptone (5.000 g);Beef extract (3.000 g)
122076CIP Medium 14yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=14

culture temp

@refgrowthtypetemperaturerange
4419positivegrowth30mesophilic
33106positivegrowth25mesophilic
122076positivegrowth22-37
122076nogrowth5psychrophilic
122076nogrowth15psychrophilic
122076nogrowth41thermophilic

Physiology and metabolism

halophily

  • @ref: 122076
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12207616947citrate+carbon source
1220764853esculin-hydrolysis
12207617234glucose-fermentation
12207617716lactose-fermentation
12207617632nitrate-reduction
12207616301nitrite-reduction
122076132112sodium thiosulfate-builds gas from
12207617632nitrate-respiration

metabolite production

  • @ref: 122076
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12207615688acetoin-
12207617234glucose-

enzymes

@refvalueactivityec
122076oxidase+
122076beta-galactosidase-3.2.1.23
122076alcohol dehydrogenase-1.1.1.1
122076gelatinase-
122076amylase-
122076DNase-
122076caseinase-3.4.21.50
122076catalase+1.11.1.6
122076tween esterase-
122076gamma-glutamyltransferase+2.3.2.2
122076lecithinase-
122076lipase-
122076lysine decarboxylase-4.1.1.18
122076ornithine decarboxylase-4.1.1.17
122076phenylalanine ammonia-lyase-4.3.1.24
122076tryptophan deaminase-
122076urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122076-+++-+----+---------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122076-------------------------------------------------++--+--------+--+-------+-+---++--+--+-+-++-+--+--

Isolation, sampling and environmental information

isolation

@refsample type
4419putrid infusion of a freshwater shellfish
122076Animal, Fresh water snail

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Host#Other#Decomposing animal
#Host#Invertebrates (Other)

taxonmaps

  • @ref: 69479
  • File name: preview.99_30967.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3236;96_15148;97_18501;98_23039;99_30967&stattab=map
  • Last taxonomy: Aquaspirillum putridiconchylium subclade
  • 16S sequence: AB680540
  • Sequence Identity:
  • Total samples: 7809
  • soil counts: 185
  • aquatic counts: 6765
  • animal counts: 783
  • plant counts: 76

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
44191Risk group (German classification)
1220761Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aquaspirillum putridiconchylium gene for 16S rRNA, partial sequenceAB0760001477ena181658
20218Aquaspirillum putridiconchylium gene for 16S rRNA, partial sequence, strain: NBRC 13962AB6805401459ena181658

External links

@ref: 4419

culture collection no.: DSM 11557, ATCC 15279, IFO 12013, NBRC 12013, NCIB 9508, CIP 107319, NCIMB 9508, IFO 13962

straininfo link

  • @ref: 79720
  • straininfo: 905

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4419Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11557)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11557
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33106Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4742
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
79720Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID905.1StrainInfo: A central database for resolving microbial strain identifiers
122076Curators of the CIPCollection of Institut Pasteur (CIP 107319)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107319