Strain identifier
BacDive ID: 10439
Type strain:
Species: Aquaspirillum putridiconchylium
Strain history: CIP <- 2001, NCIMB <- Y. Terasaki, Spirillum putridiconchylium
NCBI tax ID(s): 181658 (species)
General
@ref: 4419
BacDive-ID: 10439
DSM-Number: 11557
keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped
description: Aquaspirillum putridiconchylium DSM 11557 is a mesophilic, Gram-negative, motile bacterium that was isolated from putrid infusion of a freshwater shellfish.
NCBI tax id
- NCBI tax id: 181658
- Matching level: species
strain history
@ref | history |
---|---|
4419 | <- ATCC <- Y. Terasaki (Spirillum putridiconchylium) |
122076 | CIP <- 2001, NCIMB <- Y. Terasaki, Spirillum putridiconchylium |
doi: 10.13145/bacdive10439.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Neisseriales
- family: Chromobacteriaceae
- genus: Aquaspirillum
- species: Aquaspirillum putridiconchylium
- full scientific name: Aquaspirillum putridiconchylium (Terasaki 1961) Hylemon et al. 1973 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Spirillum putridiconchylium
@ref: 4419
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Neisseriales
family: Chromobacteriaceae
genus: Aquaspirillum
species: Aquaspirillum putridiconchylium
full scientific name: Aquaspirillum putridiconchylium (Terasaki 1961) Hylemon et al. 1973
type strain: yes
Morphology
cell morphology
- @ref: 122076
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4419 | HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) | yes | https://mediadive.dsmz.de/medium/428 | Name: HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) Composition: Agar 19.802 g/l Na2HPO4 x 2 H2O 2.87129 g/l KH2PO4 2.27723 g/l D-Glucose 1.9802 g/l Na-lactate 0.990099 g/l Na-pyruvate 0.990099 g/l D-Mannitol 0.990099 g/l DL-Malate 0.990098 g/l Na-acetate 0.990098 g/l Yeast extract 0.990098 g/l NH4Cl 0.990098 g/l Disodium succinate 0.990098 g/l MgSO4 x 7 H2O 0.495049 g/l Ferric ammonium citrate 0.049505 g/l CaCl2 x 2 H2O 0.00990098 g/l NaVO3 x H2O 0.00495049 g/l Thiamine-HCl x 2 H2O 0.00247525 g/l Nicotinic acid 0.00247525 g/l Pyridoxine hydrochloride 0.00247525 g/l Calcium pantothenate 0.00247525 g/l H3BO3 0.00148515 g/l CoCl2 x 6 H2O 0.000990099 g/l Riboflavin 0.00049505 g/l ZnSO4 x 7 H2O 0.00049505 g/l MnCl2 x 4 H2O 0.000148515 g/l Na2MoO4 x 2 H2O 0.000148515 g/l NiCl2 x 6 H2O 9.90099e-05 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Vitamin B12 4.95049e-05 g/l Folic acid 9.90099e-06 g/l Biotin 4.9505e-06 g/l Distilled water |
4419 | SPIRILLUM MEDIUM (DSMZ Medium 37) | yes | https://mediadive.dsmz.de/medium/37 | Name: SPIRILLUM MEDIUM (DSMZ Medium 37) Composition: Peptone 10.0 g/l (NH4)2SO4 1.0 g/l Succinic acid 1.0 g/l MgSO4 x 7 H2O 1.0 g/l FeCl3 x 6 H2O 0.002 g/l MnSO4 x H2O 0.002 g/l Distilled water |
4419 | ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7) | yes | https://mediadive.dsmz.de/medium/7 | Name: ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7) Composition: Agar 15.0 g/l Yeast extract 1.0 g/l Peptone 1.0 g/l Glucose 1.0 g/l Distilled water |
33106 | MEDIUM 14 - Williams and Rittenberg medium for Aquaspirillum genus | yes | Distilled water make up to (1000.000 ml);Agar (13.000 g);Yeast extract (3.000 g);Peptone (5.000 g);Beef extract (3.000 g) | |
122076 | CIP Medium 14 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=14 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
4419 | positive | growth | 30 | mesophilic |
33106 | positive | growth | 25 | mesophilic |
122076 | positive | growth | 22-37 | |
122076 | no | growth | 5 | psychrophilic |
122076 | no | growth | 15 | psychrophilic |
122076 | no | growth | 41 | thermophilic |
Physiology and metabolism
halophily
- @ref: 122076
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-10 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
122076 | 16947 | citrate | + | carbon source |
122076 | 4853 | esculin | - | hydrolysis |
122076 | 17234 | glucose | - | fermentation |
122076 | 17716 | lactose | - | fermentation |
122076 | 17632 | nitrate | - | reduction |
122076 | 16301 | nitrite | - | reduction |
122076 | 132112 | sodium thiosulfate | - | builds gas from |
122076 | 17632 | nitrate | - | respiration |
metabolite production
- @ref: 122076
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
122076 | 15688 | acetoin | - | |
122076 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
122076 | oxidase | + | |
122076 | beta-galactosidase | - | 3.2.1.23 |
122076 | alcohol dehydrogenase | - | 1.1.1.1 |
122076 | gelatinase | - | |
122076 | amylase | - | |
122076 | DNase | - | |
122076 | caseinase | - | 3.4.21.50 |
122076 | catalase | + | 1.11.1.6 |
122076 | tween esterase | - | |
122076 | gamma-glutamyltransferase | + | 2.3.2.2 |
122076 | lecithinase | - | |
122076 | lipase | - | |
122076 | lysine decarboxylase | - | 4.1.1.18 |
122076 | ornithine decarboxylase | - | 4.1.1.17 |
122076 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
122076 | tryptophan deaminase | - | |
122076 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122076 | - | + | + | + | - | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122076 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | + | - | - | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | + | - | + | - | - | - | + | + | - | - | + | - | - | + | - | + | - | + | + | - | + | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
4419 | putrid infusion of a freshwater shellfish |
122076 | Animal, Fresh water snail |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Freshwater |
#Host | #Other | #Decomposing animal |
#Host | #Invertebrates (Other) |
taxonmaps
- @ref: 69479
- File name: preview.99_30967.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3236;96_15148;97_18501;98_23039;99_30967&stattab=map
- Last taxonomy: Aquaspirillum putridiconchylium subclade
- 16S sequence: AB680540
- Sequence Identity:
- Total samples: 7809
- soil counts: 185
- aquatic counts: 6765
- animal counts: 783
- plant counts: 76
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
4419 | 1 | Risk group (German classification) |
122076 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Aquaspirillum putridiconchylium gene for 16S rRNA, partial sequence | AB076000 | 1477 | ena | 181658 |
20218 | Aquaspirillum putridiconchylium gene for 16S rRNA, partial sequence, strain: NBRC 13962 | AB680540 | 1459 | ena | 181658 |
External links
@ref: 4419
culture collection no.: DSM 11557, ATCC 15279, IFO 12013, NBRC 12013, NCIB 9508, CIP 107319, NCIMB 9508, IFO 13962
straininfo link
- @ref: 79720
- straininfo: 905
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
4419 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11557) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11557 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
33106 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/4742 | ||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
79720 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID905.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
122076 | Curators of the CIP | Collection of Institut Pasteur (CIP 107319) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107319 |