Strain identifier
BacDive ID: 10438
Type strain:
Species: Aquaspirillum polymorphum
Strain history: CIP <- 1963, NCIB <- M.A. Williams, Spirillum polymorphum
NCBI tax ID(s): 80877 (species)
General
@ref: 3496
BacDive-ID: 10438
DSM-Number: 9160
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Aquaspirillum polymorphum DSM 9160 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from pondwater.
NCBI tax id
- NCBI tax id: 80877
- Matching level: species
strain history
@ref | history |
---|---|
3496 | <- ATCC <- NCIB <- S. Rittenberg |
67770 | IAM 14441 <-- IFO 13961 <-- Y. Terasaki <-- M. A. Williams. |
121929 | CIP <- 1963, NCIB <- M.A. Williams, Spirillum polymorphum |
doi: 10.13145/bacdive10438.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Neisseriales
- family: Chromobacteriaceae
- genus: Aquaspirillum
- species: Aquaspirillum polymorphum
- full scientific name: Aquaspirillum polymorphum (Williams and Rittenberg 1957) Hylemon et al. 1973 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Spirillum polymorphum
@ref: 3496
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Neisseriales
family: Chromobacteriaceae
genus: Aquaspirillum
species: Aquaspirillum polymorphum
full scientific name: Aquaspirillum polymorphum (Williams and Rittenberg 1957) Hylemon et al. 1973
type strain: yes
Morphology
cell morphology
- @ref: 121929
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
colony morphology
- @ref: 58562
- incubation period: 3 days
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3496 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
38222 | MEDIUM 14 - Williams and Rittenberg medium for Aquaspirillum genus | yes | Distilled water make up to (1000.000 ml);Agar (13.000 g);Yeast extract (3.000 g);Peptone (5.000 g);Beef extract (3.000 g) | |
121929 | CIP Medium 14 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=14 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3496 | positive | growth | 30 | mesophilic |
38222 | positive | growth | 25 | mesophilic |
58562 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
121929 | positive | growth | 15-30 | |
121929 | no | growth | 5 | psychrophilic |
121929 | no | growth | 37 | mesophilic |
121929 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 58562
- oxygen tolerance: aerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
121929 | NaCl | positive | growth | 0 % |
121929 | NaCl | no | growth | 2 % |
121929 | NaCl | no | growth | 4 % |
121929 | NaCl | no | growth | 6 % |
121929 | NaCl | no | growth | 8 % |
121929 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | - | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
121929 | citrate | - | carbon source | 16947 |
121929 | esculin | + | hydrolysis | 4853 |
121929 | glucose | - | fermentation | 17234 |
121929 | lactose | - | fermentation | 17716 |
121929 | nitrate | + | reduction | 17632 |
121929 | nitrite | - | reduction | 16301 |
121929 | sodium thiosulfate | - | builds gas from | 132112 |
antibiotic resistance
- @ref: 121929
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 121929
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
121929 | 15688 | acetoin | - | |
121929 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
121929 | oxidase | + | |
121929 | beta-galactosidase | - | 3.2.1.23 |
121929 | alcohol dehydrogenase | - | 1.1.1.1 |
121929 | gelatinase | - | |
121929 | amylase | - | |
121929 | DNase | - | |
121929 | caseinase | - | 3.4.21.50 |
121929 | catalase | + | 1.11.1.6 |
121929 | tween esterase | - | |
121929 | gamma-glutamyltransferase | - | 2.3.2.2 |
121929 | lecithinase | - | |
121929 | lipase | - | |
121929 | lysine decarboxylase | - | 4.1.1.18 |
121929 | ornithine decarboxylase | - | 4.1.1.17 |
121929 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
121929 | protease | - | |
121929 | tryptophan deaminase | - | |
121929 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121929 | - | + | + | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121929 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121929 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | + | + | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
3496 | pondwater |
67770 | Pond water |
121929 | Environment, Pond water |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Pond (small)
taxonmaps
- @ref: 69479
- File name: preview.99_30966.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_215;96_1703;97_2039;98_23038;99_30966&stattab=map
- Last taxonomy: Aquaspirillum polymorphum subclade
- 16S sequence: AB680539
- Sequence Identity:
- Total samples: 147
- soil counts: 27
- aquatic counts: 95
- animal counts: 7
- plant counts: 18
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
3496 | 1 | Risk group (German classification) |
121929 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Aquaspirillum polymorphum strain DSM 9160 16S ribosomal RNA gene, partial sequence | FJ562215 | 1445 | ena | 80877 |
20218 | Aquaspirillum polymorphum gene for 16S rRNA, partial sequence, strain: NBRC 13961 | AB680539 | 1400 | ena | 80877 |
External links
@ref: 3496
culture collection no.: DSM 9160, ATCC 11332, IAM 14441, IFO 13961, NBRC 13961, NCIB 9072, NRRL B-2066, CCUG 49450, JCM 21224, NCIMB 9072, NCMB 51, CIP 63.15, LMG 4392, NRRL: B-2066
straininfo link
- @ref: 79719
- straininfo: 903
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
3496 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9160) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9160 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
38222 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/10021 | ||||
58562 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 49450) | https://www.ccug.se/strain?id=49450 | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
79719 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID903.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
121929 | Curators of the CIP | Collection of Institut Pasteur (CIP 63.15) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2063.15 |