Strain identifier
BacDive ID: 10426
Type strain: 
Species: Caminibacter hydrogeniphilus
Strain Designation: AM1116
Strain history: <- E. Sargenton, IFREMER <- K. Alain; AM1116 {2001}
NCBI tax ID(s): 152526 (species)
version 8.1 (current version)
General
@ref: 5275
BacDive-ID: 10426
DSM-Number: 14510
keywords: 16S sequence, Bacteria, anaerobe, thermophilic
description: Caminibacter hydrogeniphilus AM1116 is an anaerobe, thermophilic bacterium that was isolated from Alvinella pompejana tubes, deep-sea hydrothermal vent.
NCBI tax id
- NCBI tax id: 152526
- Matching level: species
strain history
- @ref: 5275
- history: <- E. Sargenton, IFREMER <- K. Alain; AM1116 {2001}
doi: 10.13145/bacdive10426.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Nautiliales
- family: Nautiliaceae
- genus: Caminibacter
- species: Caminibacter hydrogeniphilus
- full scientific name: Caminibacter hydrogeniphilus Alain et al. 2002
@ref: 5275
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Nautiliales
family: Nautiliaceae
genus: Caminibacter
species: Caminibacter hydrogeniphilus
full scientific name: Caminibacter hydrogeniphilus Alain et al. 2002
strain designation: AM1116
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5275
- name: DESULFUROBACTERIUM MEDIUM (DSMZ Medium 829)
- growth: yes
- link: https://mediadive.dsmz.de/medium/829
- composition: Name: DESULFUROBACTERIUM MEDIUM (DSMZ Medium 829) Composition: Sea Salt 29.8507 g/l Sulfur 9.95025 g/l MES [2-(N-morpholino) ethane sulfonic acid] 1.9403 g/l NH4Cl 0.995025 g/l Na2CO3 0.497512 g/l KH2PO4 0.348259 g/l Na2S2O4 0.0497512 g/l NaHCO3 0.0497512 g/l Succinic acid 0.00597015 g/l Isobutyric acid 0.00497512 g/l 2-Methylbutyric acid 0.00497512 g/l Valeric acid 0.00497512 g/l 3-Methylbutyric acid 0.00497512 g/l HCl 0.00248756 g/l Caproic acid 0.00199005 g/l FeCl2 x 4 H2O 0.00149254 g/l Sodium resazurin 0.000497512 g/l NaOH 0.000497512 g/l Pyridoxine hydrochloride 0.000298507 g/l Nicotinic acid 0.000199005 g/l Thiamine-HCl x 2 H2O 0.000199005 g/l CoCl2 x 6 H2O 0.000189055 g/l MnCl2 x 4 H2O 9.95025e-05 g/l Calcium pantothenate 9.95025e-05 g/l Vitamin B12 9.95025e-05 g/l p-Aminobenzoic acid 7.9602e-05 g/l ZnCl2 6.96517e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l D-(+)-biotin 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Distilled water
culture temp
- @ref: 5275
- growth: positive
- type: growth
- temperature: 60
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 5275
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 5275
- sample type: Alvinella pompejana tubes, deep-sea hydrothermal vent
- host species: Alvinella pompejana
- geographic location: East Pacific Rise, Elsa (HOT3)
- latitude: 12.8
- longitude: -103.933
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Host | #Invertebrates (Other) | #Annelida |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_41531.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_250;96_1214;97_23908;98_30224;99_41531&stattab=map
- Last taxonomy: Caminibacter hydrogeniphilus subclade
- 16S sequence: AJ309655
- Sequence Identity:
- Total samples: 14
- aquatic counts: 13
- animal counts: 1
Safety information
risk assessment
- @ref: 5275
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5275
- description: Caminibacter hydrogeniphilus partial 16S rRNA gene, strain AM1116
- accession: AJ309655
- length: 1413
- database: ena
- NCBI tax ID: 152526
GC content
- @ref: 5275
- GC-content: 29
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 5275
culture collection no.: DSM 14510, CIP 107140
straininfo link
- @ref: 79708
- straininfo: 100580
literature
- topic: Phylogeny
- Pubmed-ID: 12148646
- title: Caminibacter hydrogeniphilus gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing bacterium isolated from an East Pacific Rise hydrothermal vent.
- authors: Alain K, Querellou J, Lesongeur F, Pignet P, Crassous P, Raguenes G, Cueff V, Cambon-Bonavita MA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-52-4-1317
- year: 2002
- mesh: Anaerobiosis, Culture Media, DNA, Ribosomal/analysis, Epsilonproteobacteria/*classification/growth & development/isolation & purification/metabolism, *Hot Temperature, Hydrogen/*metabolism, Microscopy, Electron, Scanning, Molecular Sequence Data, Oxidation-Reduction, Pacific Ocean, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA
- topic2: Cultivation
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5275 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14510) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14510 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 79708 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100580.1 | StrainInfo: A central database for resolving microbial strain identifiers |