Strain identifier

BacDive ID: 10

Type strain: Yes

Species: Acetobacter estunensis

Strain history: IAM 14359 <-- NCIB 8935 <-- J. G. Carr ("Acetobacter estunense").

NCBI tax ID(s): 104097 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 1705

BacDive-ID: 10

DSM-Number: 4493

keywords: mesophilic, genome sequence, Bacteria, 16S sequence

description: Acetobacter estunensis DSM 4493 is a mesophilic Proteobacterium that was isolated from cider making.

NCBI tax id

  • NCBI tax id: 104097
  • Matching level: species

strain history

doi: 10.13145/bacdive10.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter estunensis
  • full scientific name: Acetobacter estunensis (Carr 1958) Lisdiyanti et al. 2001
  • synonyms

    @refsynonym
    20215Acetobacter pasteurianus subsp. estunensis
    20215Acetobacter estunense

@ref: 1705

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter estunensis

full scientific name: Acetobacter estunensis (Carr 1958) Lisdiyanti et al. 2001

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1705YPM MEDIUM (DSMZ Medium 360)yeshttps://bacmedia.dsmz.de/medium/360Name: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water
1705GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)yeshttps://bacmedia.dsmz.de/medium/105Name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) Composition: Glucose 100.0 g/l CaCO3 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
1705positivegrowth28mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: Q-9

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
1705cider making
67770Apple juice or cider or associated equipmentBristolUnited KingdomGBREurope

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Engineered#Industrial
#Engineered#Food production#Beverage

Safety information

risk assessment

  • @ref: 1705
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acetobacter estunensis 16S rRNA gene, strain CCM 3613FM1788671518ena104097
20218Acetobacter pasteurianus 16S rRNA, partial sequenceAB003970155ena438
20218Acetobacter estunensis gene for 16S rRNA, partial sequenceAB0323491446ena104097
20218Acetobacter estunensis strain LMG 1626 16S ribosomal RNA gene, partial sequenceJF7939581350ena104097
20218Acetobacter estunensis gene for 16S rRNA, partial sequence, strain: NBRC 13751AB6805051413ena104097
1705Acetobacter estunensis 16S rRNA gene, strain LMG 1626AJ4198381440ena104097

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter estunensis LMG 1626GCA_011516945contigncbi104097
66792Acetobacter estunensis strain LMG 1626104097.5wgspatric104097
67770Acetobacter estunensis strain LMG 1626, whole genome shotgun sequencing projectWOTH00000000ncbi104097

GC content

  • @ref: 67770
  • GC-content: 59.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 1705

culture collection no.: DSM 4493, ATCC 23753, CCUG 18130, IAM 14359, LMG 1626, NCIMB 8935, JCM 21172, BCRC 12953, CCM 3613, IFO 13751, NBRC 13751

straininfo link

@refpassport
20218http://www.straininfo.net/strains/158810
20218http://www.straininfo.net/strains/376
20218http://www.straininfo.net/strains/377
20218http://www.straininfo.net/strains/158811
20218http://www.straininfo.net/strains/375
20218http://www.straininfo.net/strains/158812

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1705Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4493)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4493
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/