Strain identifier
BacDive ID: 10
Type strain: 
Species: Acetobacter estunensis
Strain history: IAM 14359 <-- NCIB 8935 <-- J. G. Carr ("Acetobacter estunense").
NCBI tax ID(s): 104097 (species)
version 8.1 (current version)
General
@ref: 1705
BacDive-ID: 10
DSM-Number: 4493
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Acetobacter estunensis DSM 4493 is a mesophilic, Gram-negative bacterium that was isolated from cider making.
NCBI tax id
- NCBI tax id: 104097
- Matching level: species
strain history
| @ref | history |
|---|---|
| 1705 | <- NCIMB <- J.G. Carr |
| 67770 | IAM 14359 <-- NCIB 8935 <-- J. G. Carr ("Acetobacter estunense"). |
doi: 10.13145/bacdive10.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter estunensis
- full scientific name: Acetobacter estunensis (Carr 1958) Lisdiyanti et al. 2001
synonyms
@ref synonym 20215 Acetobacter pasteurianus subsp. estunensis 20215 Acetobacter estunense
@ref: 1705
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter estunensis
full scientific name: Acetobacter estunensis (Carr 1958) Lisdiyanti et al. 2001
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.999
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 1705 | YPM MEDIUM (DSMZ Medium 360) | yes | https://mediadive.dsmz.de/medium/360 | Name: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water |
| 1705 | GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) | yes | https://mediadive.dsmz.de/medium/105 | Name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) Composition: Glucose 100.0 g/l CaCO3 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1705 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.999 |
observation
- @ref: 67770
- observation: quinones: Q-9
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 1705 | cider making | ||||
| 67770 | Apple juice or cider or associated equipment | Bristol | United Kingdom | GBR | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Fermented |
| #Engineered | #Industrial | |
| #Engineered | #Food production | #Beverage |
taxonmaps
- @ref: 69479
- File name: preview.99_6551.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_503;97_577;98_664;99_6551&stattab=map
- Last taxonomy: Lysinibacillus
- 16S sequence: FM178867
- Sequence Identity:
- Total samples: 142
- soil counts: 122
- aquatic counts: 8
- animal counts: 9
- plant counts: 3
Safety information
risk assessment
- @ref: 1705
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Acetobacter estunensis 16S rRNA gene, strain CCM 3613 | FM178867 | 1518 | ena | 104097 |
| 20218 | Acetobacter pasteurianus 16S rRNA, partial sequence | AB003970 | 155 | ena | 438 |
| 20218 | Acetobacter estunensis gene for 16S rRNA, partial sequence | AB032349 | 1446 | ena | 104097 |
| 20218 | Acetobacter estunensis strain LMG 1626 16S ribosomal RNA gene, partial sequence | JF793958 | 1350 | ena | 104097 |
| 20218 | Acetobacter estunensis gene for 16S rRNA, partial sequence, strain: NBRC 13751 | AB680505 | 1413 | ena | 104097 |
| 1705 | Acetobacter estunensis 16S rRNA gene, strain LMG 1626 | AJ419838 | 1440 | ena | 104097 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetobacter estunensis strain LMG 1626 | 104097.5 | wgs | patric | 104097 |
| 67770 | Acetobacter estunensis LMG 1626 | GCA_011516945 | contig | ncbi | 104097 |
GC content
- @ref: 67770
- GC-content: 59.3
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 75.014 | no |
| flagellated | no | 78.716 | no |
| gram-positive | no | 96.124 | no |
| anaerobic | no | 98.583 | no |
| aerobic | yes | 87.157 | no |
| halophile | no | 90.975 | no |
| spore-forming | no | 94.852 | no |
| thermophile | no | 94.895 | yes |
| glucose-util | yes | 82.438 | no |
| glucose-ferment | no | 87.767 | no |
External links
@ref: 1705
culture collection no.: DSM 4493, ATCC 23753, CCUG 18130, IAM 14359, LMG 1626, NCIMB 8935, JCM 21172, BCRC 12953, CCM 3613, IFO 13751, NBRC 13751
straininfo link
- @ref: 69694
- straininfo: 92175
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1705 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4493) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4493 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 69694 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92175.1 | StrainInfo: A central database for resolving microbial strain identifiers |