Name: Actinotalea ferrariae CF5-4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133962

Type strain:

Species: Actinotalea ferrariae

Strain Designation: CF5-4

Culture col. no.: KCTC 29134, CCTCC AB 2012198, DSM 112671, JCM 31479

Strain history: <- Y Li, Huazhong Agri. Univ., China

NCBI tax ID(s): 1386098 (species)

SI-ID 400521

DSM 112671

Section

Actinotalea ferrariae CF5-4 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from iron mine.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Cellulomonadaceae*
	Genus	*Actinotalea*
	Species	**Actinotalea ferrariae**
	Full Scientific Name (LPSN)	Actinotalea ferrariae Li et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30960]	Gram stain	positive
[Ref.: #67771]	Gram stain	negative

[Ref.: #30960]	Cell length	1.15 µm

[Ref.: #30960]	Cell width	0.45 µm

[Ref.: #30960]	Cell shape	rod-shaped

[Ref.: #30960]	Motility	no

[Ref.: #30960]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67613]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #67613]

Culture medium growth

[Ref.: #67613]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67613]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #30960]	growth	04-40 °C
[Ref.: #30960]	optimum	28 °C
[Ref.: #67613]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #30960]	Temperature range	mesophilic
[Ref.: #67613]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30960]			optimum	7
[Ref.: #30960]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30960]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30960]		NaCl		growth	0-7	%
[Ref.: #30960]		NaCl		optimum	3	%

[Ref.: #30960]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-10(H₄)
[Ref.: #67771]	Observation	quinones: MK-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30960]	acetate ChEBI	+	carbon source
[Ref.: #30960]	arabinose ChEBI	+	carbon source
[Ref.: #30960]	esculin ChEBI	+	hydrolysis
[Ref.: #30960]	glucose ChEBI	+	carbon source
[Ref.: #30960]	glycogen ChEBI	+	carbon source
[Ref.: #30960]	maltose ChEBI	+	carbon source
[Ref.: #30960]	nitrate ChEBI	+	reduction
[Ref.: #30960]	ribose ChEBI	+	carbon source
[Ref.: #30960]	salicin ChEBI	+	carbon source
[Ref.: #30960]	sucrose ChEBI	+	carbon source
[Ref.: #30960]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30960]	acid phosphatase	+	3.1.3.2
[Ref.: #30960]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30960]	alpha-galactosidase	+	3.2.1.22
[Ref.: #30960]	catalase	+	1.11.1.6
[Ref.: #30960]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30960]	Sample type/isolated from	iron mine

[Ref.: #67613]	Sample type/isolated from	iron mining powder
[Ref.: #67613]	Geographic location (country and/or sea, region)	Hubei Provence
[Ref.: #67613]	Country	China
[Ref.: #67613]	Country ISO 3 Code	CHN
[Ref.: #67613]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Iron mining powder of Hongshan Iron Mine of Daye City
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hubei Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From environmental sample
[Ref.: #67771]	Geographic location (country and/or sea, region)	Hubei
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Other

#Mine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ730135 (>99% sequence identity) for Actinotalea ferrariae from Microbeatlas

Aquatic Samples	55
Soil Samples	138
Animal Samples	192
Plant Samples	13
Total Samples	398

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #67613]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30960]	Actinotalea ferrariae CF5-4 16S ribosomal RNA gene, partial sequence	HQ730135	1483	GenBank	948458 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinotalea ferrariae CF5-4	GCA_000603945	contig	GenBank	948458 tax ID
[Ref.: #66792]	Actinotalea ferrariae CF5-4	948458.3	wgs	PATRIC	948458 tax ID	*
[Ref.: #66792]	Actinotalea ferrariae CF5-4	2588254172	draft	JGI IMG/M	948458 tax ID	*

[Ref.: #30960]	GC-content	74.7 mol%
[Ref.: #67770]	GC-content	74.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinotalea ferrariae CF5-4 PATRIC: 948458.3
[Ref.: #69480]	motile	no	73.155	no
[Ref.: #69480]	flagellated	no	96.23	yes
[Ref.: #69480]	gram-positive	yes	94.038	no
[Ref.: #69480]	anaerobic	no	98.455	no
[Ref.: #69480]	halophile	no	91.077	no
[Ref.: #69480]	spore-forming	no	88.512	no
[Ref.: #69480]	thermophile	no	95.695	yes
[Ref.: #69480]	glucose-util	yes	86.172	yes
[Ref.: #69480]	aerobic	yes	84.929	yes
[Ref.: #69480]	glucose-ferment	no	77.295	no

Availability in culture collections External links

[Ref.: #67613]

Culture collection no.

KCTC 29134, CCTCC AB 2012198, DSM 112671, JCM 31479

[Ref.: #91645]

SI-ID 400521

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Physiological and Genomic Characterization of Actinotalea subterranea sp. nov. from Oil-Degrading Methanogenic Enrichment and Reclassification of the Family Actinotaleaceae.	Semenova EM, Grouzdev DS, Sokolova DS, Tourova TP, Poltaraus AB, Potekhina NV, Shishina PN, Bolshakova MA, Avtukh AN, Ianutsevich EA, Tereshina VM, Nazina TN	Microorganisms	10.3390/microorganisms10020378	2022	*
Phylogeny	Actinotalea solisilvae sp. nov., isolated from forest soil and emended description of the genus Actinotalea.	Yan ZF, Lin P, Li CT, Kook M, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002584	2018	*
Phylogeny	Actinotalea caeni sp. nov., isolated from a sludge sample of a biofilm reactor.	Jin L, Ko SR, Lee CS, Ahn CY, Lee JS, Lee KC, Oh HM, Lee HG	Int J Syst Evol Microbiol	10.1099/ijsem.0.001769	2017	*
Phylogeny	Pseudactinotalea terrae gen. nov., sp. nov., isolated from greenhouse soil, and reclassification of Actinotalea suaedae as Pseudactinotalea suaedae comb. nov.	Cho H, Hamada M, Ahn JH, Weon HY, Joa JH, Suzuki KI, Kwon SW, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001701	2017	*
Phylogeny	Actinotalea ferrariae sp. nov., isolated from an iron mine, and emended description of the genus Actinotalea.	Li Y, Chen F, Dong K, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.048512-0	2013	*
Phylogeny	Actinotalea suaedae sp. nov., isolated from the halophyte Suaeda physophora in Xinjiang, Northwest China.	Zhao S, Li L, Li SH, Wang HF, Hozzein WN, Zhang YG, Wadaan MA, Li WJ, Tian CY	Antonie Van Leeuwenhoek	10.1007/s10482-014-0297-y	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30960

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27290 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67613

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 112671

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91645

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400521.1 )

#27290

IJSEM 3398 2013 ( DOI 10.1099/ijs.0.048512-0 , PubMed 23524356 )

* These data were automatically processed and therefore are not curated

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