Name: Aquisphaera giovannonii OJF2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11947

Type strain:

Species: Aquisphaera giovannonii

Strain Designation: OJF2

Culture col. no.: DSM 22561, CECT 7510

Strain history: <- O. M. Lage, Faculty Sci., Univ. Porto, Portugal; OJF2

NCBI tax ID(s): 406548 (species)

SI-ID 378822

CECT 7510, DSM 22561

Section

Aquisphaera giovannonii OJF2 is a spore-forming, mesophilic, Gram-negative bacterium that was isolated from sediments of an ornamental freshwater aquarium.

Gram-negative
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Isosphaerales*
	Family	*Isosphaeraceae*
	Genus	*Aquisphaera*
	Species	**Aquisphaera giovannonii**
	Full Scientific Name (LPSN)	Aquisphaera giovannonii Bondoso et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16400]

Culture medium

PYGV AGAR (DSMZ Medium 621)

[Ref.: #16400]

Culture medium growth

[Ref.: #16400]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16400]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16400]			growth	35 °C

[Ref.: #16400]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %97
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.944

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16400]	Sample type/isolated from	sediments of an ornamental freshwater aquarium
[Ref.: #16400]	Geographic location (country and/or sea, region)	Porto
[Ref.: #16400]	Country	Portugal
[Ref.: #16400]	Country ISO 3 Code	PRT
[Ref.: #16400]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Water reservoir (Aquarium/pool)
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16400]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16400]	Aquisphaera giovannonii strain OJF2 16S ribosomal RNA gene, partial sequence	DQ986200	1480	ENA	406548 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aquisphaera giovannonii OJF2	GCA_008087625	complete	GenBank	406548 tax ID	*
[Ref.: #66792]	Aquisphaera giovannonii strain OJF2	406548.3	complete	PATRIC	406548 tax ID	*

[Ref.: #16400]

GC-content

70.0 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aquisphaera giovannonii OJF2 NCBI: GCA_008087625.1
[Ref.: #69481]	spore-forming	yes	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aquisphaera giovannonii OJF2 NCBI: GCA_008087625.1
[Ref.: #69480]	motile	no	75.115	no
[Ref.: #69480]	flagellated	no	93.941	no
[Ref.: #69480]	gram-positive	no	95.942	no
[Ref.: #69480]	anaerobic	no	96.873	no
[Ref.: #69480]	aerobic	yes	87.418	no
[Ref.: #69480]	halophile	no	94.688	no
[Ref.: #69480]	spore-forming	no	85.309	no
[Ref.: #69480]	glucose-util	yes	85.386	no
[Ref.: #69480]	thermophile	no	98.755	no
[Ref.: #69480]	glucose-ferment	no	89.13	no

Availability in culture collections External links

[Ref.: #16400]

Culture collection no.

DSM 22561, CECT 7510

[Ref.: #81160]

SI-ID 378822

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aquisphaera giovannonii gen. nov., sp. nov., a planctomycete isolated from a freshwater aquarium.	Bondoso J, Albuquerque L, Nobre MF, Lobo-da-Cunha A, da Costa MS, Lage OM	Int J Syst Evol Microbiol	10.1099/ijs.0.027474-0	2011	*

References

#16400

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22561

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81160

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID378822.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Aquisphaera giovannonii in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF