Name: Archaeoglobus sulfaticallidus PM70-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 18100

Type strain:

Species: Archaeoglobus sulfaticallidus

Strain Designation: PM70-1

Culture col. no.: DSM 19444, JCM 14716

Strain history: B. O. Steinsbu PM70-1.

NCBI tax ID(s): 1316941 (species)

SI-ID 407160

DSM 19444

Section

Archaeoglobus sulfaticallidus PM70-1 is an anaerobe, thermophilic archaeon that was isolated from black rust formed on the steel surface of a seafloor borehole observatory exposed to hot ridge flank crustal fluids .

anaerobe
thermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Archaeoglobi*
	Order	*Archaeoglobales*
	Family	*Archaeoglobaceae*
	Genus	*Archaeoglobus*
	Species	**Archaeoglobus sulfaticallidus**
	Full Scientific Name (LPSN)	Archaeoglobus sulfaticallidus Steinsbu et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #22889]	Cell length	2.2 µm

[Ref.: #22889]	Cell width	0.4 µm

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8021]

Culture medium

ARCHAEOGLOBUS SULFATICALLIDUS MEDIUM (DSMZ Medium 1278)

[Ref.: #8021]

Culture medium growth

[Ref.: #8021]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8021]

Culture medium composition

expand / minimize

[Ref.: #22889]

Culture medium

HYL medium

[Ref.: #22889]

Culture medium growth

[Ref.: #22889]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8021]	growth	75 °C
[Ref.: #22889]	maximum	80 °C
[Ref.: #22889]	minimum	60 °C
[Ref.: #22889]	growth	75 °C
[Ref.: #67770]	growth	75 °C

[Ref.: #8021]	Temperature range	thermophilic
[Ref.: #22889]	Temperature range	hyperthermophilic
[Ref.: #22889]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #22889]			maximum	7.6
[Ref.: #22889]			minimum	6.3

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8021]

Oxygen tolerance

anaerobe

	Salt		Salt conc.
[Ref.: #22889]	NaCl	maximum	3.5	%(w/v)
[Ref.: #22889]	NaCl	minimum	0.5	%(w/v)
[Ref.: #22889]	NaCl	optimum	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #22889]	acetate ChEBI	-	electron donor
[Ref.: #22889]	formate ChEBI	-	electron donor
[Ref.: #22889]	iron ChEBI	-	electron acceptor
[Ref.: #22889]	lactate ChEBI	+	electron donor
[Ref.: #22889]	nitrate ChEBI	-	electron acceptor
[Ref.: #22889]	pyruvate ChEBI	+	electron donor
[Ref.: #22889]	sulfate ChEBI	+	electron acceptor
[Ref.: #22889]	sulfite ChEBI	+	electron acceptor
[Ref.: #22889]	thiosulfate ChEBI	+	electron acceptor
[Ref.: #22889]	yeast extract	-	electron donor

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8021]	Sample type/isolated from	black rust formed on the steel surface of a seafloor borehole observatory (ODP CORK 1026B) exposed to hot ridge flank crustal fluids (64°C, water depth 2658 m)
[Ref.: #8021]	Geographic location (country and/or sea, region)	eastern flank of the Juan de Fuca Ridge
[Ref.: #8021]	Country	Canada
[Ref.: #8021]	Country ISO 3 Code	CAN
[Ref.: #8021]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Black rust formed on the steel surface of a borehole observatory (ODP CORK 1026B) on the eastern flank of Juan de Fuca Ridge
[Ref.: #67770]	Geographic location (country and/or sea, region)	eastern Pacific Ocean
[Ref.: #67770]	Country	Pacific Ocean
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ810190 (>99% sequence identity) for Archaeoglobus sulfaticallidus subclade from Microbeatlas

Aquatic Samples	19
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	20

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8021]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8021]	Archaeoglobus sulfaticallidus PM70-1 16S ribosomal RNA gene, partial sequence	FJ810190	1453	ENA	387631 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Archaeoglobus sulfaticallidus PM70-1	GCA_000385565	complete	GenBank	387631 tax ID	*
[Ref.: #66792]	Archaeoglobus sulfaticallidus PM70-1, DSM 19444	2522125074	complete	JGI IMG/M	387631 tax ID	*
[Ref.: #66792]	Archaeoglobus sulfaticallidus PM70-1	387631.5	complete	PATRIC	387631 tax ID	*

[Ref.: #8021]	GC-content	42 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #8021]	GC-content	43.2 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Archaeoglobus sulfaticallidus PM70-1 PM70-1 NCBI: GCA_000385565.1
[Ref.: #69480]	motile	no	88.078	no
[Ref.: #69480]	flagellated	no	96.626	no
[Ref.: #69480]	gram-positive	no	97.548	no
[Ref.: #69480]	anaerobic	yes	98.047	yes
[Ref.: #69480]	aerobic	no	95.834	no
[Ref.: #69480]	halophile	no	81.794	no
[Ref.: #69480]	spore-forming	no	93.821	no
[Ref.: #69480]	thermophile	yes	99.999	yes
[Ref.: #69480]	glucose-util	yes	70.843	no
[Ref.: #69480]	glucose-ferment	no	79.373	no

Availability in culture collections External links

[Ref.: #8021]

Culture collection no.

DSM 19444, JCM 14716

[Ref.: #87088]

SI-ID 407160

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of the Thermophilic and Facultatively Chemolithoautotrophic Sulfate Reducer Archaeoglobus sulfaticallidus Strain PM70-1T.	Stokke R, Hocking WP, Steinsbu BO, Steen IH	Genome Announc	10.1128/genomeA.00406-13	2013	*
Phylogeny	Archaeoglobus sulfaticallidus sp. nov., a thermophilic and facultatively lithoautotrophic sulfate-reducer isolated from black rust exposed to hot ridge flank crustal fluids.	Steinsbu BO, Thorseth IH, Nakagawa S, Inagaki F, Lever MA, Engelen B, Ovreas L, Pedersen RB	Int J Syst Evol Microbiol	10.1099/ijs.0.016105-0	2010	*

References

#8021

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19444

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22889

Bjørn O. Steinsbu, Ingunn H. Thorseth, Satoshi Nakagawa, Fumio Inagaki, Mark A. Lever, Bert Engelen, Lise Øvreås, Rolf B. Pedersen: Archaeoglobus sulfaticallidus sp. nov., a thermophilic and facultatively lithoautotrophic sulfate-reducer isolated from black rust exposed to hot ridge flank crustal fluids. IJSEM 60: 2745 - 2752 2010 ( DOI 10.1099/ijs.0.016105-0 , PubMed 20061497 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87088

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407160.1 )

* These data were automatically processed and therefore are not curated

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Archaeoglobus sulfaticallidus PM70-1 PM70-1

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