Name: Acrocarpospora corrugata E 90
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16504

Type strain:

Species: Acrocarpospora corrugata

Strain Designation: E 90

Culture col. no.: DSM 43316, ATCC 29331, IFO 13972, NBRC 13972, NCIB 11120, JCM 3181, BCRC 12360, BCRC 16357, IMSNU 20325, KCTC 9431, NCIMB 11120

Strain history: KCC A-0181 <-- S. T. Williams E-90.

NCBI tax ID(s): 35763 (species)

SI-ID 39473

ATCC 29331, DSM 43316, IFO 13972, NCIB 11120, JCM 3181, CCRC 12360, NCIMB 11120, KCTC 9431, NBRC 13972, BCRC 12360, BCRC 16357, CCRC 16357

Section

Acrocarpospora corrugata E 90 is a spore-forming, mesophilic bacterium that was isolated from beach sand.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Acrocarpospora*
	Species	**Acrocarpospora corrugata**
	Full Scientific Name (LPSN)	Acrocarpospora corrugata (Williams and Sharples 1976) Tamura et al. 2000

Synonym

Streptosporangium corrugatum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.361

[Ref.: #19566]	Colony color	Ochre yellow
[Ref.: #19566]	Incubation period	10-14 days
[Ref.: #19566]	Cultivation medium used	ISP 2

[Ref.: #19566]	Colony color	Ochre yellow
[Ref.: #19566]	Incubation period	10-14 days
[Ref.: #19566]	Cultivation medium used	ISP 3

[Ref.: #19566]	Colony color	Ochre yellow
[Ref.: #19566]	Incubation period	10-14 days
[Ref.: #19566]	Cultivation medium used	ISP 4

[Ref.: #19566]	Colony color	Ochre yellow
[Ref.: #19566]	Incubation period	10-14 days
[Ref.: #19566]	Cultivation medium used	ISP 5

[Ref.: #19566]	Colony color	Ochre yellow
[Ref.: #19566]	Incubation period	10-14 days
[Ref.: #19566]	Cultivation medium used	ISP 6

[Ref.: #19566]	Colony color	Ochre yellow
[Ref.: #19566]	Incubation period	10-14 days
[Ref.: #19566]	Cultivation medium used	ISP 7

[Ref.: #19566]	Multicellular complex forming ability	no
[Ref.: #19566]	Medium Name (multicellularity)	ISP 2

[Ref.: #19566]	Multicellular complex forming ability	no
[Ref.: #19566]	Medium Name (multicellularity)	ISP 3

[Ref.: #19566]	Multicellular complex forming ability	no
[Ref.: #19566]	Medium Name (multicellularity)	ISP 4

[Ref.: #19566]	Multicellular complex forming ability	no
[Ref.: #19566]	Medium Name (multicellularity)	ISP 5

[Ref.: #19566]	Multicellular complex forming ability	no
[Ref.: #19566]	Medium Name (multicellularity)	ISP 6

[Ref.: #19566]	Multicellular complex forming ability	no
[Ref.: #19566]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #10952]	growth	28 °C
[Ref.: #19566]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #10952]	Temperature range	mesophilic
[Ref.: #19566]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19566]		NaCl		maximum	2.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₂), MK-9(III,VIII-H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19566]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19566]	cellulose ChEBI	+/-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19566]	fructose ChEBI	+/-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19566]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19566]	mannitol ChEBI	+/-
[Ref.: #19566]	myo-inositol ChEBI	+/-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19566]	raffinose ChEBI	+/-
[Ref.: #19566]	rhamnose ChEBI	+
[Ref.: #19566]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19566]	xylose ChEBI	+/-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19566]	417	-	-	-	-	-	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19566]	404	not determinedn.d.	+	-	+	-	+	+	-	-	-	+	+	+	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10952]	Sample type/isolated from	beach sand

[Ref.: #67770]	Sample type/isolated from	Beach sand, Freshfiled
[Ref.: #67770]	Geographic location (country and/or sea, region)	Lancashire
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Coast
#Environmental	#Terrestrial	#Sandy

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10952]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19566]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptosporangium corrugatum 16S rRNA gene	U48991	1417	ENA	35763 tax ID	*
[Ref.: #20218]	Acrocarpospora corrugata gene for 16S rRNA, partial sequence	AB188150	1479	ENA	35763 tax ID	*
[Ref.: #20218]	S.corrugatum gene for 16S ribosomal RNA	X70427	1370	ENA	35763 tax ID	*
[Ref.: #20218]	S.corrugatum DNA for 16S ribosomal RNA gene	X89941	1449	ENA	35763 tax ID	*
[Ref.: #20218]	Streptosporangium corrugatum 16S-23S ribosomal RNA spacer region	AF004011	415	ENA	35763 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acrocarpospora corrugata NBRC 13972	GCA_009687845	scaffold	GenBank	35763 tax ID	*
[Ref.: #66792]	Acrocarpospora corrugata strain NBRC 13972	35763.4	wgs	PATRIC	35763 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acrocarpospora corrugata NBRC 13972 NCBI: GCA_009687845.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acrocarpospora corrugata NBRC 13972 NCBI: GCA_009687845.1
[Ref.: #69480]	motile	no	92.938	no
[Ref.: #69480]	flagellated	no	98.044	no
[Ref.: #69480]	gram-positive	yes	86.311	no
[Ref.: #69480]	anaerobic	no	98.871	no
[Ref.: #69480]	aerobic	yes	92.795	no
[Ref.: #69480]	halophile	no	95.697	no
[Ref.: #69480]	spore-forming	yes	93.7	no
[Ref.: #69480]	glucose-util	yes	86.964	yes
[Ref.: #69480]	thermophile	no	98.026	yes
[Ref.: #69480]	glucose-ferment	no	91.867	no

Availability in culture collections External links

[Ref.: #10952]

Culture collection no.

DSM 43316, ATCC 29331, IFO 13972, NBRC 13972, NCIB 11120, JCM 3181, BCRC 12360, BCRC 16357, IMSNU 20325, KCTC 9431, NCIMB 11120

[Ref.: #85537]

SI-ID 39473

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acrocarpospora phusangensis sp. nov., isolated from a temperate peat swamp forest soil.	Niemhom N, Suriyachadkun C, Tamura T, Thawai C	Int J Syst Evol Microbiol	10.1099/ijs.0.046227-0	2012	*
Phylogeny	Acrocarpospora gen. nov., a new genus of the order Actinomycetales.	Tamura T, Suzuki S, Hatano K	Int J Syst Evol Microbiol	10.1099/00207713-50-3-1163	2000	*

References

#10952

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43316

#19566

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85537

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39473.1 )

* These data were automatically processed and therefore are not curated

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Acrocarpospora corrugata NBRC 13972

Acrocarpospora corrugata NBRC 13972

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