Name: Dyella lipolytica DHOB07
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140577

Type strain:

Species: Dyella lipolytica

Strain Designation: DHOB07

Culture col. no.: NBRC 111473, KCTC 52132

Strain history: <- Lihong QIU, Sun Yat-Sen Univ., China

NCBI tax ID(s): 1867835 (species)

Section

Dyella lipolytica DHOB07 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from forest soil of Dinghushan Biosphere Reserve.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Rhodanobacteraceae*
	Genus	*Dyella*
	Species	**Dyella lipolytica**
	Full Scientific Name (LPSN)	Dyella lipolytica Tang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43180]	Gram stain	negative

[Ref.: #43180]	Cell length	1.0-2.5 µm

[Ref.: #43180]	Cell width	0.3-0.6 µm

[Ref.: #43180]	Cell shape	rod-shaped

[Ref.: #43180]	Motility	no

[Ref.: #43180]	Colony size	1.2-1.7 mm
[Ref.: #43180]	Colony color	yellow
[Ref.: #43180]	Colony shape	circular
[Ref.: #43180]	Incubation period	2 days
[Ref.: #43180]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

		Temperature
[Ref.: #43180]	optimum	28 °C
[Ref.: #43180]	growth	10-37 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #43180]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43180]			optimum	5-5.5
[Ref.: #43180]			growth	4-7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43180]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43180]	Type of spore	spore
[Ref.: #43180]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43180]		NaCl		growth	0-0.5	%(w/v)
[Ref.: #43180]		NaCl		optimum	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43180]	adipate ChEBI	+	carbon source
[Ref.: #43180]	amygdalin ChEBI	-	carbon source
[Ref.: #43180]	arbutin ChEBI	+	carbon source
[Ref.: #43180]	casein	-	hydrolysis
[Ref.: #43180]	cellobiose ChEBI	-	carbon source
[Ref.: #43180]	D-arabinose ChEBI	+	carbon source
[Ref.: #43180]	D-galactose ChEBI	+	carbon source
[Ref.: #43180]	D-glucose ChEBI	+	carbon source
[Ref.: #43180]	D-lyxose ChEBI	-	carbon source
[Ref.: #43180]	D-sorbitol ChEBI	+	carbon source
[Ref.: #43180]	D-tagatose ChEBI	+	carbon source
[Ref.: #43180]	D-xylose ChEBI	-	carbon source
[Ref.: #43180]	decanoate ChEBI	-	carbon source
[Ref.: #43180]	erythritol ChEBI	+	carbon source
[Ref.: #43180]	esculin ChEBI	-	hydrolysis
[Ref.: #43180]	esculin ferric citrate	+	carbon source
[Ref.: #43180]	gelatin ChEBI	-	hydrolysis
[Ref.: #43180]	gentiobiose ChEBI	-	carbon source
[Ref.: #43180]	glucose ChEBI	-	fermentation
[Ref.: #43180]	glycogen ChEBI	+	carbon source
[Ref.: #43180]	inulin ChEBI	+	carbon source
[Ref.: #43180]	L-arabinose ChEBI	-	carbon source
[Ref.: #43180]	L-fucose ChEBI	+	carbon source
[Ref.: #43180]	lactose ChEBI	-	carbon source
[Ref.: #43180]	malate ChEBI	+	carbon source
[Ref.: #43180]	melezitose ChEBI	+	carbon source
[Ref.: #43180]	melibiose ChEBI	-	carbon source
[Ref.: #43180]	methyl alpha-D-glucopyranoside ChEBI	-	carbon source
[Ref.: #43180]	myo-inositol ChEBI	+	carbon source
[Ref.: #43180]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43180]	nitrate ChEBI	-	reduction
[Ref.: #43180]	potassium 2-dehydro-D-gluconate	-	carbon source
[Ref.: #43180]	raffinose ChEBI	+	carbon source
[Ref.: #43180]	salicin ChEBI	-	carbon source
[Ref.: #43180]	starch ChEBI	-	hydrolysis
[Ref.: #43180]	starch ChEBI	-	carbon source
[Ref.: #43180]	sucrose ChEBI	-	carbon source
[Ref.: #43180]	trehalose ChEBI	+	carbon source
[Ref.: #43180]	turanose ChEBI	-	carbon source
[Ref.: #43180]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43180]	amikacin ChEBI	yes	30	µg
[Ref.: #43180]	chloramphenicol ChEBI				yes	30	µg
[Ref.: #43180]	ciprofloxacin ChEBI	yes	5	µg
[Ref.: #43180]	erythromycin ChEBI	yes	15	µg
[Ref.: #43180]	gentamicin ChEBI	yes	10	µg
[Ref.: #43180]	kanamycin ChEBI	yes	30	µg
[Ref.: #43180]	netilmycin ChEBI	yes	30	µg
[Ref.: #43180]	novobiocin ChEBI	yes	5	µg
[Ref.: #43180]	penicillin ChEBI				yes	10	Unit
[Ref.: #43180]	polymyxin ChEBI	yes	30	Unit
[Ref.: #43180]	streptomycin ChEBI	yes	10	µg
[Ref.: #43180]	tetracycline ChEBI	yes	30	µg
[Ref.: #43180]	tobramycin ChEBI	yes	10	µg
[Ref.: #43180]	vancomycin ChEBI	yes	30	µg
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43180]		hydrogen sulfide ChEBI	no
[Ref.: #43180]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43180]	acid phosphatase	+	3.1.3.2
[Ref.: #43180]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43180]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43180]	alpha-fucosidase	+	3.2.1.51
[Ref.: #43180]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43180]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43180]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43180]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43180]	beta-galactosidase	+	3.2.1.23
[Ref.: #43180]	beta-glucosidase	-	3.2.1.21
[Ref.: #43180]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43180]	catalase	+	1.11.1.6
[Ref.: #43180]	cystine arylamidase	+	3.4.11.3
[Ref.: #43180]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43180]	esterase (C 4)	+
[Ref.: #43180]	esterase Lipase (C 8)	+
[Ref.: #43180]	leucine arylamidase	+	3.4.11.1
[Ref.: #43180]	lipase (C 14)	-
[Ref.: #43180]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43180]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43180]	trypsin	-	3.4.21.4
[Ref.: #43180]	urease	-	3.5.1.5
[Ref.: #43180]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43180]

Fatty acid	Percentage
C17:1 iso ω9c	20.4
C16:0 iso	19.2
C15:0 iso	14.3
C15:0 iso 2OH / C16:1ω7c	7.6
C17:0 iso	6.2
C16:0	6.1
C15:0 anteiso	5.1
C11:0 iso 3OH	4
C11:0 iso	3.7
C13:0 iso 3OH	2.3
C14:0 iso	1.4
C17:0 anteiso	1.2
cyclo-C17:0	1.1
C18:0 iso	0.9
C15:1ω6c	0.8
C17:0 iso 3OH	0.5
C15:1ω5c	0.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43180]	Sample type/isolated from	forest soil of Dinghushan Biosphere Reserve
[Ref.: #43180]	Geographic location (country and/or sea, region)	Guangdong Province, PR China
[Ref.: #43180]	Country	China
[Ref.: #43180]	Country ISO 3 Code	CHN
[Ref.: #43180]	Continent	Asia
[Ref.: #43180]	Geographic location	23.0000°/112.0000°

[Ref.: #67771]	Sample type/isolated from	From forest soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Dinghushan Biosphere Reserve, Guangdong Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43180]	16S rRNA gene sequences	KX430827	1468	ENA	1849580 tax ID

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GC-content

59.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

NBRC 111473, KCTC 52132

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dyella tabacisoli sp. nov., a bacterium isolated from an arable soil sample of Nicotiana tabacum L.	Li QQ, Chen X, Zhou XK, Dong LM, Xiao M, Fang BZ, Li WJ, Duan YQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003138	2019	*
Phylogeny	Dyella halodurans sp. nov., isolated from lower subtropical forest soil.	Cai YM, Gao ZH, Chen MH, Huang YX, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002969	2018	*
Phylogeny	Dyella lipolytica sp. nov., a lipolytic bacterium isolated from lower subtropical forest soil.	Tang L, Chen MH, Nie XC, Ma MR, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002020	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43180

Liang Tang, Mei-hong Chen, Xi-chen Nie, Meng-ran Ma and Li-hong Qiu: Dyella lipolytica sp. nov., a lipolytic bacterium isolated from lower subtropical forest soil. IJSEM 67: 1235 - 1240 2017 ( DOI 10.1099/ijsem.0.002020 , PubMed 28581924 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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