Name: Dyella mobilis DHON07
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141036

Type strain:

Species: Dyella mobilis

Strain Designation: DHON07

Culture col. no.: CGMCC 1.15400, NBRC 111475

NCBI tax ID(s): 1849582 (species)

Section

Dyella mobilis DHON07 is an aerobe, Gram-negative, motile bacterium that forms irregular colonies and was isolated from upper layer of forest soil of Dinghushan Biosphere Reserve, Guangdong Province, PR China.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Rhodanobacteraceae*
	Genus	*Dyella*
	Species	**Dyella mobilis**
	Full Scientific Name (LPSN)	Dyella mobilis Xia et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43916]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.972

[Ref.: #43916]	Cell length	1.2-1.9 µm

[Ref.: #43916]	Cell width	0.3-0.6 µm

[Ref.: #43916]	Cell shape	rod-shaped

[Ref.: #43916]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %93.846

[Ref.: #43916]	Flagellum arrangement	polar

[Ref.: #43916]	Colony size	0.8-1.4 mm
[Ref.: #43916]	Colony color	light yellow
[Ref.: #43916]	Colony shape	irregular
[Ref.: #43916]	Incubation period	4 days
[Ref.: #43916]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Tryptic soy agar

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43916]			growth	10-37 °C
[Ref.: #43916]			optimum	25-28 °C

[Ref.: #43916]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43916]			optimum	5.5-6.0
[Ref.: #43916]			growth	4.0-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43916]

Oxygen tolerance

aerobe

[Ref.: #43916]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.96

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43916]		NaCl		growth	0-2.5	%(w/v)
[Ref.: #43916]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43916]	2-dehydro-D-gluconate ChEBI	-	carbon source
[Ref.: #43916]	5-dehydro-D-gluconate ChEBI	-	carbon source
[Ref.: #43916]	adipate ChEBI	-	carbon source
[Ref.: #43916]	amygdalin ChEBI	-	carbon source
[Ref.: #43916]	arbutin ChEBI	-	carbon source
[Ref.: #43916]	arginine ChEBI	+	hydrolysis
[Ref.: #43916]	casein	+	hydrolysis
[Ref.: #43916]	cellobiose ChEBI	-	carbon source
[Ref.: #43916]	D-arabinose ChEBI	-	carbon source
[Ref.: #43916]	D-arabitol ChEBI	-	carbon source
[Ref.: #43916]	D-fructose ChEBI	+	carbon source
[Ref.: #43916]	D-fucose ChEBI	-	carbon source
[Ref.: #43916]	D-galactose ChEBI	+	carbon source
[Ref.: #43916]	D-lyxose ChEBI	-	carbon source
[Ref.: #43916]	D-mannitol ChEBI	-	carbon source
[Ref.: #43916]	D-mannose ChEBI	-	carbon source
[Ref.: #43916]	D-ribose ChEBI	-	carbon source
[Ref.: #43916]	D-sorbitol ChEBI	-	carbon source
[Ref.: #43916]	D-tagatose ChEBI	-	carbon source
[Ref.: #43916]	D-xylose ChEBI	+	carbon source
[Ref.: #43916]	decanoate ChEBI	+	carbon source
[Ref.: #43916]	dna ChEBI	-	hydrolysis
[Ref.: #43916]	erythritol ChEBI	-	carbon source
[Ref.: #43916]	esculin ChEBI	+	hydrolysis
[Ref.: #43916]	esculin ferric citrate	+	carbon source
[Ref.: #43916]	galactitol ChEBI	-	carbon source
[Ref.: #43916]	gelatin ChEBI	-	hydrolysis
[Ref.: #43916]	gentiobiose ChEBI	-	carbon source
[Ref.: #43916]	glycerol ChEBI	-	carbon source
[Ref.: #43916]	glycogen ChEBI	-	carbon source
[Ref.: #43916]	inulin ChEBI	+	carbon source
[Ref.: #43916]	L-arabinose ChEBI	-	carbon source
[Ref.: #43916]	L-arabitol ChEBI	-	carbon source
[Ref.: #43916]	L-fucose ChEBI	+	carbon source
[Ref.: #43916]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43916]	L-sorbose ChEBI	-	carbon source
[Ref.: #43916]	L-xylose ChEBI	-	carbon source
[Ref.: #43916]	lactose ChEBI	-	carbon source
[Ref.: #43916]	malate ChEBI	-	carbon source
[Ref.: #43916]	maltose ChEBI	+	carbon source
[Ref.: #43916]	melezitose ChEBI	-	carbon source
[Ref.: #43916]	melibiose ChEBI	-	carbon source
[Ref.: #43916]	methyl alpha-D-glucopyranoside ChEBI	-	carbon source
[Ref.: #43916]	methyl alpha-D-mannoside ChEBI	-	carbon source
[Ref.: #43916]	methyl beta-D-xylopyranoside ChEBI	-	carbon source
[Ref.: #43916]	myo-inositol ChEBI	-	carbon source
[Ref.: #43916]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43916]	nitrate ChEBI	-	reduction
[Ref.: #43916]	phenylacetate ChEBI	-	carbon source
[Ref.: #43916]	potassium gluconate ChEBI	-	carbon source
[Ref.: #43916]	raffinose ChEBI	-	carbon source
[Ref.: #43916]	ribitol ChEBI	-	carbon source
[Ref.: #43916]	salicin ChEBI	-	carbon source
[Ref.: #43916]	sodium citrate ChEBI	-	carbon source
[Ref.: #43916]	starch ChEBI	-	carbon source
[Ref.: #43916]	starch ChEBI	-	hydrolysis
[Ref.: #43916]	sucrose ChEBI	-	carbon source
[Ref.: #43916]	trehalose ChEBI	+	carbon source
[Ref.: #43916]	turanose ChEBI	-	carbon source
[Ref.: #43916]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43916]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43916]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43916]	chloramphenicol ChEBI				yes	30	µg (disc)
[Ref.: #43916]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43916]	erythromycin ChEBI				yes	15	µg (disc)
[Ref.: #43916]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #43916]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #43916]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #43916]	penicillin g ChEBI				yes	10	Unit (disc)
[Ref.: #43916]	polymyxin ChEBI	yes	300	Unit (disc)
[Ref.: #43916]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #43916]	tetracycline ChEBI				yes	30	µg (disc)
[Ref.: #43916]	tobramycin ChEBI	yes	10	µg (disc)
[Ref.: #43916]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43916]		hydrogen sulfide ChEBI	no
[Ref.: #43916]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43916]	acid phosphatase	+	3.1.3.2
[Ref.: #43916]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43916]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43916]	alpha-fucosidase	+	3.2.1.51
[Ref.: #43916]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43916]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43916]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43916]	beta-galactosidase	+	3.2.1.23
[Ref.: #43916]	beta-glucosidase	+	3.2.1.21
[Ref.: #43916]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43916]	catalase	+	1.11.1.6
[Ref.: #43916]	cystine arylamidase	+	3.4.11.3
[Ref.: #43916]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43916]	esterase (C 4)	+
[Ref.: #43916]	esterase Lipase (C 8)	+
[Ref.: #43916]	leucine arylamidase	+	3.4.11.1
[Ref.: #43916]	lipase (C 14)	-
[Ref.: #43916]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43916]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43916]	trypsin	-	3.4.21.4
[Ref.: #43916]	urease	+	3.5.1.5
[Ref.: #43916]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43916]	Sample type/isolated from	upper layer of forest soil of Dinghushan Biosphere Reserve, Guangdong Province, PR China
[Ref.: #43916]	Geographic location (country and/or sea, region)	Dinghushan Biosphere Reserve, Guangdong Province
[Ref.: #43916]	Country	China
[Ref.: #43916]	Country ISO 3 Code	CHN
[Ref.: #43916]	Continent	Asia
[Ref.: #43916]	Geographic location	23.1667°/112.5170°
[Ref.: #43916]	Enrichment culture	MM1F medium
[Ref.: #43916]	Enrichment culture composition	0.04 g/L MgSO4.7H2O, 0.02 g/L CaCl2.2H2O, 0.05 g/L yeast extract, 0.5 g/L fructose, 15 g/L agar, pH 5.0
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dyella mobilis DHON07	GCA_016904945	scaffold	GenBank	1849582 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Dyella mobilis DHON07 NCBI: GCA_016904945.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dyella mobilis DHON07 NCBI: GCA_016904945.1
[Ref.: #69480]	flagellated	no	68.83	yes
[Ref.: #69480]	gram-positive	no	98.177	yes
[Ref.: #69480]	anaerobic	no	98.677	yes
[Ref.: #69480]	aerobic	yes	86.489	yes
[Ref.: #69480]	halophile	no	95.015	no
[Ref.: #69480]	spore-forming	no	94.995	yes
[Ref.: #69480]	thermophile	no	99.351	yes
[Ref.: #69480]	glucose-util	yes	90.923	no
[Ref.: #69480]	motile	yes	79.463	yes
[Ref.: #69480]	glucose-ferment	no	87.1	no

Availability in culture collections External links

[Ref.: #43916]

Culture collection no.

CGMCC 1.15400, NBRC 111475

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dyella caseinilytica sp. nov., Dyella flava sp. nov. and Dyella mobilis sp. nov., isolated from forest soil.	Xia F, Chen MH, Lv YY, Zhang HY, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002090	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43916

Fan Xia, Mei-hong Chen, Ying-ying Lv, Han-yun Zhang, Li-hong Qiu: Dyella caseinilytica sp. nov., Dyella flava sp. nov. and Dyella mobilis sp. nov., isolated from forest soil. IJSEM 67: 3237 - 3245 2017 ( DOI 10.1099/ijsem.0.002090 , PubMed 28840798 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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