Name: Salinisphaera shabanensis E1L3A
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17786

Type strain:

Species: Salinisphaera shabanensis

Strain Designation: E1L3A

Culture col. no.: DSM 14853, JCM 11575

Strain history: R. Huber E1L3A.

NCBI tax ID(s): 180542 (species)

SI-ID 111748

JCM 11575, DSM 14853

Section

Salinisphaera shabanensis E1L3A is a mesophilic bacterium that was isolated from brine from the brine-seawater interface.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Nevskiales*
	Family	*Salinisphaeraceae*
	Genus	*Salinisphaera*
	Species	**Salinisphaera shabanensis**
	Full Scientific Name (LPSN)	Salinisphaera shabanensis Antunes et al. 2003

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5580]

Culture medium

SDO MEDIUM (DSMZ Medium 1151)

[Ref.: #5580]

Culture medium growth

[Ref.: #5580]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5580]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5580]			growth	28 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #5580]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5580]	Sample type/isolated from	brine from the brine-seawater interface
[Ref.: #5580]	Geographic location (country and/or sea, region)	Red Sea, Shaban Deep

[Ref.: #67770]	Sample type/isolated from	Brine-seawater interface of the Shaban Deep
[Ref.: #67770]	Geographic location (country and/or sea, region)	Red Sea
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ421425 (>99% sequence identity) for Salinisphaera shabanensis subclade from Microbeatlas

Aquatic Samples	1109
Soil Samples	18
Animal Samples	51
Plant Samples	3
Total Samples	1181

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5580]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5580]	Salinisphaera shabanense 16S rRNA gene, isolate E1L3A	AJ421425	1448	ENA	1033802 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Salinisphaera shabanensis E1L3A E1L3A	GCA_000215955	contig	GenBank	1033802 tax ID
[Ref.: #66792]	Salinisphaera shabanensis E1L3A	1033802.3	wgs	PATRIC	1033802 tax ID	*
[Ref.: #66792]	Salinisphaera shabanensis E1L3A	2562617193	draft	JGI IMG/M	1033802 tax ID	*

[Ref.: #5580]	GC-content	61.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	61.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinisphaera shabanensis E1L3A PATRIC: 1033802.3
[Ref.: #69480]	motile	yes	90.554	no
[Ref.: #69480]	flagellated	yes	50.598	no
[Ref.: #69480]	gram-positive	no	98.354	no
[Ref.: #69480]	anaerobic	no	97.719	no
[Ref.: #69480]	aerobic	yes	86.848	no
[Ref.: #69480]	halophile	yes	84.103	no
[Ref.: #69480]	spore-forming	no	96.387	no
[Ref.: #69480]	thermophile	no	98.755	no
[Ref.: #69480]	glucose-util	yes	70.197	no
[Ref.: #69480]	glucose-ferment	no	91.785	no

Availability in culture collections External links

[Ref.: #5580]

Culture collection no.

DSM 14853, JCM 11575

[Ref.: #86777]

SI-ID 111748

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salifodinibacter halophilus gen. nov., sp. nov., a halophilic gammaproteobacterium in the family Salinisphaeraceae isolated from a salt mine in the Colombian Andes.	Parada-Pinilla MP, Diaz-Cardenas C, Lopez G, Diaz-Riano JI, Gonzalez LN, Restrepo S, Trujillo ME, Baena S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004490	2020	*
Phylogeny	Salinisphaera halophila sp. nov., a moderately halophilic bacterium isolated from brine of a salt well.	Zhang YJ, Tang SK, Shi R, Klenk HP, Chen C, Yang LL, Zhou Y, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.035584-0	2011	*
Phylogeny	Salinisphaera orenii sp. nov., isolated from a solar saltern.	Park SJ, Cha IT, Kim SJ, Shin KS, Hong Y, Roh DH, Rhee SK	Int J Syst Evol Microbiol	10.1099/ijs.0.028647-0	2011	*
Phylogeny	Salinisphaera dokdonensis sp. nov., isolated from surface seawater.	Bae GD, Hwang CY, Kim HM, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.010058-0	2009	*
Phylogeny	Salinisphaera hydrothermalis sp. nov., a mesophilic, halotolerant, facultatively autotrophic, thiosulfate-oxidizing gammaproteobacterium from deep-sea hydrothermal vents, and emended description of the genus Salinisphaera.	Crespo-Medina M, Chatziefthimiou A, Cruz-Matos R, Perez-Rodriguez I, Barkay T, Lutz RA, Starovoytov V, Vetriani C	Int J Syst Evol Microbiol	10.1099/ijs.0.005058-0	2009	*
Phylogeny	Salinisphaera shabanensis gen. nov., sp. nov., a novel, moderately halophilic bacterium from the brine-seawater interface of the Shaban Deep, Red Sea.	Antunes A, Eder W, Fareleira P, Santos H, Huber R	Extremophiles	10.1007/s00792-002-0292-5	2002	*

References

#5580

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14853

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86777

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID111748.1 )

* These data were automatically processed and therefore are not curated

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