Name: Arsenicitalea aurantiaca 42-50
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133299

Type strain:

Species: Arsenicitalea aurantiaca

Strain Designation: 42-50

Culture col. no.: CCTCC AB 2014325, KCTC 42825

NCBI tax ID(s): 1783274 (species)

Section

Arsenicitalea aurantiaca 42-50 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from high-arsenic sediment.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Devosiaceae*
	Genus	*Arsenicitalea*
	Species	**Arsenicitalea aurantiaca**
	Full Scientific Name (LPSN)	Arsenicitalea aurantiaca Mu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25061]	Gram stain	negative

[Ref.: #25061]	Cell shape	rod-shaped

[Ref.: #25061]	Motility	no

[Ref.: #25061]	Colony color	orange
[Ref.: #25061]	Colony shape	circular
[Ref.: #25061]	Cultivation medium used	0.1xTSB

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25061]

Culture medium

0.1xTSB

[Ref.: #25061]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25061]			growth	15.0-42.0 °C
[Ref.: #25061]			optimum	37 °C

[Ref.: #25061]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #25061]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25061]

Oxygen tolerance

aerobe

[Ref.: #25061]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25061]		NaCl	resistant	1.0-5.0	%(w/v)

[Ref.: #25061]	Name of tolerated compound	Arsenate
[Ref.: #25061]	Tolerated concentration	40
[Ref.: #25061]	Name of tolerated compound	Arsenite
[Ref.: #25061]	Tolerated concentration	20

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25061]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #25061]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #25061]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #25061]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #25061]	adipate ChEBI	-	assimilation
[Ref.: #25061]	casein	-	hydrolysis
[Ref.: #25061]	D-glucose ChEBI	+	assimilation
[Ref.: #25061]	D-mannitol ChEBI	+	assimilation
[Ref.: #25061]	D-mannose ChEBI	+	assimilation
[Ref.: #25061]	D-ribose ChEBI	+	assimilation
[Ref.: #25061]	D-sorbitol ChEBI	+	assimilation
[Ref.: #25061]	decanoate ChEBI	-	assimilation
[Ref.: #25061]	glycogen ChEBI	-	assimilation
[Ref.: #25061]	L-alanine ChEBI	-	assimilation
[Ref.: #25061]	L-arabinose ChEBI	-	assimilation
[Ref.: #25061]	L-fucose ChEBI	+	assimilation
[Ref.: #25061]	L-histidine ChEBI	-	assimilation
[Ref.: #25061]	L-proline ChEBI	-	assimilation
[Ref.: #25061]	L-rhamnose ChEBI	-	assimilation
[Ref.: #25061]	L-serine ChEBI	-	assimilation
[Ref.: #25061]	lactate ChEBI	-	assimilation
[Ref.: #25061]	malate ChEBI	+	assimilation
[Ref.: #25061]	maltose ChEBI	-	assimilation
[Ref.: #25061]	melibiose ChEBI	+	assimilation
[Ref.: #25061]	myo-inositol ChEBI	-	assimilation
[Ref.: #25061]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #25061]	nitrate ChEBI	+	reduction
[Ref.: #25061]	potassium gluconate ChEBI	-	assimilation
[Ref.: #25061]	riboflavin ChEBI	-	hydrolysis
[Ref.: #25061]	salicin ChEBI	+	assimilation
[Ref.: #25061]	sodium acetate ChEBI	-	assimilation
[Ref.: #25061]	sodium citrate ChEBI	+	assimilation
[Ref.: #25061]	sodium malonate ChEBI	-	assimilation
[Ref.: #25061]	starch ChEBI	-	hydrolysis
[Ref.: #25061]	tryptophan ChEBI	-	energy source
[Ref.: #25061]	tyrosine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25061]		hydrogen sulfide ChEBI	no
[Ref.: #25061]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #25061]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25061]	alkaline phosphatase	-	3.1.3.1
[Ref.: #25061]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25061]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25061]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25061]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25061]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25061]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25061]	beta-glucosidase	+	3.2.1.21
[Ref.: #25061]	catalase	+	1.11.1.6
[Ref.: #25061]	cystine arylamidase	-	3.4.11.3
[Ref.: #25061]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25061]	esterase (C 4)	+
[Ref.: #25061]	esterase Lipase (C 8)	+
[Ref.: #25061]	gelatinase	+
[Ref.: #25061]	leucine arylamidase	+	3.4.11.1
[Ref.: #25061]	lipase (C 14)	-
[Ref.: #25061]	lysine decarboxylase	-	4.1.1.18
[Ref.: #25061]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25061]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25061]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #25061]	trypsin	+	3.4.21.4
[Ref.: #25061]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25061]	urease	+	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	resorcinol degradation	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	glycogen biosynthesis	100	4 of 4
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	degradation of sugar acids	92	23 of 25
[Ref.: #66794]	pyrimidine metabolism	91.11	41 of 45
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	purine metabolism	86.17	81 of 94
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	vitamin B12 metabolism	82.35	28 of 34
[Ref.: #66794]	degradation of sugar alcohols	81.25	13 of 16
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	alanine metabolism	79.31	23 of 29
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	degradation of hexoses	77.78	14 of 18
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	degradation of pentoses	75	21 of 28
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	71.43	20 of 28
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	arginine metabolism	66.67	16 of 24
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	66.67	6 of 9
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	oxidative phosphorylation	64.84	59 of 91
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	tryptophan metabolism	63.16	24 of 38
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	histidine metabolism	62.07	18 of 29
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	61.54	8 of 13
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	non-pathway related	60.53	23 of 38
[Ref.: #66794]	vitamin K metabolism	60	3 of 5
[Ref.: #66794]	phenol degradation	60	12 of 20
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	lipid metabolism	58.06	18 of 31
[Ref.: #66794]	lysine metabolism	54.76	23 of 42
[Ref.: #66794]	vitamin B1 metabolism	53.85	7 of 13
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	sphingosine metabolism	50	3 of 6
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	coenzyme A metabolism	50	2 of 4
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	polyamine pathway	47.83	11 of 23
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	d-xylose degradation	45.45	5 of 11
[Ref.: #66794]	carotenoid biosynthesis	45.45	10 of 22
[Ref.: #66794]	arachidonic acid metabolism	44.44	8 of 18
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	40	4 of 10
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	3-phenylpropionate degradation	40	6 of 15
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	toluene degradation	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25061]	Sample type/isolated from	high-arsenic sediment
[Ref.: #25061]	Geographic location (country and/or sea, region)	Jianghan Plain, Hubei Province
[Ref.: #25061]	Country	China
[Ref.: #25061]	Country ISO 3 Code	CHN
[Ref.: #25061]	Continent	Asia
[Ref.: #25061]	Geographic location	30.0000°/113.0000°
[Ref.: #25061]	Enrichment culture	0.1xTSB agar
[Ref.: #25061]	Enrichment culture composition	with 5.0 mM As(V) (Na3AsO4.12H2O)
[Ref.: #25061]	Enrichment culture duration	7 days
[Ref.: #25061]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT595938 (>99% sequence identity) for Arsenicitalea aurantiaca subclade from Microbeatlas

Aquatic Samples	1
Soil Samples	7
Animal Samples	6
Plant Samples
Total Samples	14

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25061]	Hyphomicrobiaceae bacterium 42-50 16S ribosomal RNA gene, partial sequence	KT595938	1438	GenBank	1783274 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Arsenicitalea aurantiaca 42-50	GCA_003994485	contig	GenBank	1783274 tax ID	*
[Ref.: #66792]	Arsenicitalea aurantiaca 42-50	2837662100	draft	JGI IMG/M	1783274 tax ID	*

[Ref.: #25061]

GC-content

73.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25061]

Culture collection no.

CCTCC AB 2014325, KCTC 42825

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arsenicitalea aurantiaca gen. nov., sp. nov., a new member of the family Hyphomicrobiaceae, isolated from high-arsenic sediment.	Mu Y, Zhou L, Zeng XC, Liu L, Pan Y, Chen X, Wang J, Li S, Li WJ, Wang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001543	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25061

Y. Z. Mu, L.,Zeng, X. C.,Liu, L.,Pan, Y.,Chen, X.,Wang, J.,Li, S.,Li, W. J.,Wang, Y.: Arsenicitalea aurantiaca gen. nov., sp. nov., a new member of the family Hyphomicrobiaceae, isolated from high-arsenic sediment. IJSEM 66: 5478 - 5484 2016 ( DOI 10.1099/ijsem.0.001543 , PubMed 27902179 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Arsenicitalea aurantiaca in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF