Name: Dyella humi DHG40
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133215

Type strain:

Species: Dyella humi

Strain Designation: DHG40

Culture col. no.: KCTC 42629, LMG 28842

NCBI tax ID(s): 1770547 (species)

Section

Dyella humi DHG40 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from forest soil.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Rhodanobacteraceae*
	Genus	*Dyella*
	Species	**Dyella humi**
	Full Scientific Name (LPSN)	Dyella humi Chen et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25007]	Gram stain	negative

[Ref.: #25007]	Cell length	1.2-3.0 µm

[Ref.: #25007]	Cell width	0.3-0.7 µm

[Ref.: #25007]	Cell shape	rod-shaped

[Ref.: #25007]	Motility	yes

[Ref.: #25007]	Colony size	1.0-2.5 mm
[Ref.: #25007]	Colony color	yellow
[Ref.: #25007]	Colony shape	circular
[Ref.: #25007]	Incubation period	2 days
[Ref.: #25007]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25007]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #25007]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25007]			optimum	25-28 °C

[Ref.: #25007]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #25007]			optimum	6.0-7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25007]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25007]		NaCl		growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25007]	2-dehydro-D-gluconate ChEBI	-	energy source
[Ref.: #25007]	2-dehydro-D-gluconate ChEBI	-	carbon source
[Ref.: #25007]	5-dehydro-D-gluconate ChEBI	-	energy source
[Ref.: #25007]	5-dehydro-D-gluconate ChEBI	-	carbon source
[Ref.: #25007]	adipate ChEBI	-	energy source
[Ref.: #25007]	adipate ChEBI	-	carbon source
[Ref.: #25007]	amygdalin ChEBI	-	energy source
[Ref.: #25007]	amygdalin ChEBI	-	carbon source
[Ref.: #25007]	arbutin ChEBI	-	energy source
[Ref.: #25007]	arbutin ChEBI	-	carbon source
[Ref.: #25007]	casein	+	hydrolysis
[Ref.: #25007]	cellobiose ChEBI	+	energy source
[Ref.: #25007]	cellobiose ChEBI	+	carbon source
[Ref.: #25007]	D-arabinose ChEBI	-	energy source
[Ref.: #25007]	D-arabinose ChEBI	-	carbon source
[Ref.: #25007]	D-arabitol ChEBI	-	energy source
[Ref.: #25007]	D-arabitol ChEBI	-	carbon source
[Ref.: #25007]	D-fructose ChEBI	+	energy source
[Ref.: #25007]	D-fructose ChEBI	+	carbon source
[Ref.: #25007]	D-fucose ChEBI	-	energy source
[Ref.: #25007]	D-fucose ChEBI	-	carbon source
[Ref.: #25007]	D-galactose ChEBI	+	energy source
[Ref.: #25007]	D-galactose ChEBI	+	carbon source
[Ref.: #25007]	D-glucose ChEBI	+	energy source
[Ref.: #25007]	D-glucose ChEBI	+	carbon source
[Ref.: #25007]	D-lyxose ChEBI	-	energy source
[Ref.: #25007]	D-lyxose ChEBI	-	carbon source
[Ref.: #25007]	D-mannitol ChEBI	-	energy source
[Ref.: #25007]	D-mannitol ChEBI	-	carbon source
[Ref.: #25007]	D-mannose ChEBI	+	energy source
[Ref.: #25007]	D-mannose ChEBI	+	carbon source
[Ref.: #25007]	D-ribose ChEBI	-	energy source
[Ref.: #25007]	D-ribose ChEBI	-	carbon source
[Ref.: #25007]	D-sorbitol ChEBI	-	energy source
[Ref.: #25007]	D-sorbitol ChEBI	-	carbon source
[Ref.: #25007]	D-tagatose ChEBI	-	energy source
[Ref.: #25007]	D-tagatose ChEBI	-	carbon source
[Ref.: #25007]	D-xylose ChEBI	+	energy source
[Ref.: #25007]	D-xylose ChEBI	+	carbon source
[Ref.: #25007]	decanoate ChEBI	-	energy source
[Ref.: #25007]	decanoate ChEBI	-	carbon source
[Ref.: #25007]	erythritol ChEBI	-	energy source
[Ref.: #25007]	erythritol ChEBI	-	carbon source
[Ref.: #25007]	esculin ChEBI	+	hydrolysis
[Ref.: #25007]	esculin ferric citrate	+	energy source
[Ref.: #25007]	esculin ferric citrate	+	carbon source
[Ref.: #25007]	galactitol ChEBI	-	energy source
[Ref.: #25007]	galactitol ChEBI	-	carbon source
[Ref.: #25007]	gelatin ChEBI	-	hydrolysis
[Ref.: #25007]	gentiobiose ChEBI	+	energy source
[Ref.: #25007]	gentiobiose ChEBI	+	carbon source
[Ref.: #25007]	glucose ChEBI	-	fermentation
[Ref.: #25007]	glycerol ChEBI	-	energy source
[Ref.: #25007]	glycerol ChEBI	-	carbon source
[Ref.: #25007]	glycogen ChEBI	-	energy source
[Ref.: #25007]	glycogen ChEBI	-	carbon source
[Ref.: #25007]	indole ChEBI	-	hydrolysis
[Ref.: #25007]	inulin ChEBI	+	energy source
[Ref.: #25007]	inulin ChEBI	+	carbon source
[Ref.: #25007]	L-arabinose ChEBI	-	energy source
[Ref.: #25007]	L-arabinose ChEBI	-	carbon source
[Ref.: #25007]	L-arabinose ChEBI	+	energy source
[Ref.: #25007]	L-arabinose ChEBI	+	carbon source
[Ref.: #25007]	L-arabitol ChEBI	-	energy source
[Ref.: #25007]	L-arabitol ChEBI	-	carbon source
[Ref.: #25007]	L-fucose ChEBI	-	energy source
[Ref.: #25007]	L-fucose ChEBI	-	carbon source
[Ref.: #25007]	L-rhamnose ChEBI	-	energy source
[Ref.: #25007]	L-rhamnose ChEBI	-	carbon source
[Ref.: #25007]	L-sorbose ChEBI	-	energy source
[Ref.: #25007]	L-sorbose ChEBI	-	carbon source
[Ref.: #25007]	L-xylose ChEBI	-	energy source
[Ref.: #25007]	L-xylose ChEBI	-	carbon source
[Ref.: #25007]	lactose ChEBI	+	energy source
[Ref.: #25007]	lactose ChEBI	+	carbon source
[Ref.: #25007]	malate ChEBI	+	energy source
[Ref.: #25007]	malate ChEBI	+	carbon source
[Ref.: #25007]	maltose ChEBI	+	energy source
[Ref.: #25007]	maltose ChEBI	+	carbon source
[Ref.: #25007]	melezitose ChEBI	-	energy source
[Ref.: #25007]	melezitose ChEBI	-	carbon source
[Ref.: #25007]	melibiose ChEBI	+	energy source
[Ref.: #25007]	melibiose ChEBI	+	carbon source
[Ref.: #25007]	methyl alpha-D-glucopyranoside ChEBI	+	energy source
[Ref.: #25007]	methyl alpha-D-glucopyranoside ChEBI	+	carbon source
[Ref.: #25007]	methyl alpha-D-mannoside ChEBI	-	energy source
[Ref.: #25007]	methyl alpha-D-mannoside ChEBI	-	carbon source
[Ref.: #25007]	methyl beta-D-xylopyranoside ChEBI	-	energy source
[Ref.: #25007]	methyl beta-D-xylopyranoside ChEBI	-	carbon source
[Ref.: #25007]	myo-inositol ChEBI	-	energy source
[Ref.: #25007]	myo-inositol ChEBI	-	carbon source
[Ref.: #25007]	N-acetylglucosamine ChEBI	+	energy source
[Ref.: #25007]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #25007]	nitrate ChEBI	-	reduction
[Ref.: #25007]	phenylacetate ChEBI	-	energy source
[Ref.: #25007]	phenylacetate ChEBI	-	carbon source
[Ref.: #25007]	potassium gluconate ChEBI	-	energy source
[Ref.: #25007]	potassium gluconate ChEBI	-	carbon source
[Ref.: #25007]	raffinose ChEBI	-	energy source
[Ref.: #25007]	raffinose ChEBI	-	carbon source
[Ref.: #25007]	ribitol ChEBI	-	energy source
[Ref.: #25007]	ribitol ChEBI	-	carbon source
[Ref.: #25007]	salicin ChEBI	-	energy source
[Ref.: #25007]	salicin ChEBI	-	carbon source
[Ref.: #25007]	sodium citrate ChEBI	-	energy source
[Ref.: #25007]	sodium citrate ChEBI	-	carbon source
[Ref.: #25007]	starch ChEBI	-	hydrolysis
[Ref.: #25007]	starch ChEBI	-	energy source
[Ref.: #25007]	starch ChEBI	-	carbon source
[Ref.: #25007]	sucrose ChEBI	-	energy source
[Ref.: #25007]	sucrose ChEBI	-	carbon source
[Ref.: #25007]	trehalose ChEBI	+	energy source
[Ref.: #25007]	trehalose ChEBI	+	carbon source
[Ref.: #25007]	tryptophan ChEBI	-	energy source
[Ref.: #25007]	turanose ChEBI	-	energy source
[Ref.: #25007]	turanose ChEBI	-	carbon source
[Ref.: #25007]	tween 80 ChEBI	-	hydrolysis
[Ref.: #25007]	xylitol ChEBI	-	energy source
[Ref.: #25007]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25007]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #25007]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25007]	acid phosphatase	+	3.1.3.2
[Ref.: #25007]	alkaline phosphatase	-	3.1.3.1
[Ref.: #25007]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25007]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25007]	alpha-galactosidase	+	3.2.1.22
[Ref.: #25007]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25007]	alpha-mannosidase	+	3.2.1.24
[Ref.: #25007]	beta-galactosidase	+	3.2.1.23
[Ref.: #25007]	beta-glucosidase	+	3.2.1.21
[Ref.: #25007]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25007]	cystine arylamidase	+	3.4.11.3
[Ref.: #25007]	esterase (C 4)	+
[Ref.: #25007]	esterase lipase (C 8)	+
[Ref.: #25007]	leucine arylamidase	+	3.4.11.1
[Ref.: #25007]	lipase (C 14)	+
[Ref.: #25007]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #25007]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25007]	trypsin	-	3.4.21.4
[Ref.: #25007]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25007]	urease	-	3.5.1.5
[Ref.: #25007]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25007]	Sample type/isolated from	forest soil
[Ref.: #25007]	Geographic location (country and/or sea, region)	Dinghushan Biosphere Reserve, Guangdong Province
[Ref.: #25007]	Country	China
[Ref.: #25007]	Country ISO 3 Code	CHN
[Ref.: #25007]	Continent	Asia
[Ref.: #25007]	Enrichment culture	1/10 TSB medium
[Ref.: #25007]	Enrichment culture composition	per litre distilled water: 0.5g NaCl, 0.25g KH2PO4, 0.25g glucose, 1.7g casein peptone and 0.3g soya peptone; pH 7.0
[Ref.: #25007]	Enrichment culture duration	7 days
[Ref.: #25007]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25007]	Dyella sp. DHG40 16S ribosomal RNA gene, partial sequence	KP938953	1506	GenBank	1770547 tax ID

[Ref.: #25007]

GC-content

60.3 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25007]

Culture collection no.

KCTC 42629, LMG 28842

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dyella acidisoli sp. nov., D. flagellata sp. nov. and D. nitratireducens sp. nov., isolated from forest soil.	Chen MH, Xia F, Lv YY, Zhou XY, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001716	2017	*
Phylogeny	Dyella humi sp. nov., isolated from forest soil.	Chen MH, Lv YY, Wang J, Tang L, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001358	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25007

M. H. L. Chen, Y. Y.,Wang, J.,Tang, L.,Qiu, L. H.: Dyella humi sp. nov., isolated from forest soil. IJSEM 66: 4372 - 4376 2016 ( DOI 10.1099/ijsem.0.001358 , PubMed 27487774 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Dyella humi in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF