Name: Bifidobacterium eulemuris LMM_E3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132454

Type strain:

Species: Bifidobacterium eulemuris

Strain Designation: LMM_E3

Culture col. no.: DSM 100216, JCM 30801

Strain history: P. Mattarelli; Dept. of Agric. Sci., Bologna Univ., Italy; LMM_E3.

NCBI tax ID(s): 1765219 (species)

SI-ID 400372

DSM 100216

Section

Bifidobacterium eulemuris LMM_E3 is a microaerophile, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from fresh faeces of black lemurs Eulemur macaco housed under semi-natural conditions.

colony-forming
Gram-positive
rod-shaped
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium eulemuris**
	Full Scientific Name (LPSN)	Bifidobacterium eulemuris Michelini et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43709]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #43709]	Cell shape	rod-shaped

[Ref.: #43709]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.094

[Ref.: #43709]	Type of hemolysis	gamma
[Ref.: #43709]	Colony size	1-2.5 mm
[Ref.: #43709]	Colony color	White
[Ref.: #43709]	Colony shape	circular
[Ref.: #43709]	Incubation period	3 days
[Ref.: #43709]	Cultivation medium used	TPY agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43709]

Culture medium

TPY agar

[Ref.: #43709]

Culture medium growth

[Ref.: #24243]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #24243]

Culture medium growth

[Ref.: #24243]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24243]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24243]	growth	37 °C
[Ref.: #43709]	growth	35-42 °C
[Ref.: #43709]	growth	30 °C
[Ref.: #43709]	growth	47 °C
[Ref.: #43709]	optimum	37-42 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #24243]	Temperature range	mesophilic
[Ref.: #43709]	Temperature range	mesophilic
[Ref.: #43709]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43709]			optimum	6.5-7
[Ref.: #43709]			growth	5.5-7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43709]	Oxygen tolerance	microaerophile
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43709]	amygdalin ChEBI	+	builds acid from
[Ref.: #43709]	amygdalin ChEBI	+	fermentation
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	arbutin ChEBI	+	builds acid from
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	cellobiose ChEBI	-	builds acid from
[Ref.: #43709]	cellobiose ChEBI	-	fermentation
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43709]	D-arabinose ChEBI	-	fermentation
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	D-fructose ChEBI	+/-	builds acid from
[Ref.: #43709]	D-fructose ChEBI	+/-	fermentation
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	D-galactose ChEBI	-	builds acid from
[Ref.: #43709]	D-galactose ChEBI	-	fermentation
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	D-glucose ChEBI	+	builds acid from
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43709]	D-mannitol ChEBI	+	fermentation
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	D-mannose ChEBI	+	builds acid from
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	D-ribose ChEBI	+	builds acid from
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #43709]	D-sorbitol ChEBI	+	fermentation
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	D-xylose ChEBI	+	builds acid from
[Ref.: #43709]	D-xylose ChEBI	+	fermentation
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	gentiobiose ChEBI	+	builds acid from
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	glycerol ChEBI	+/-	builds acid from
[Ref.: #43709]	glycerol ChEBI	+/-	fermentation
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	glycogen ChEBI	-	builds acid from
[Ref.: #43709]	glycogen ChEBI	-	fermentation
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	L-arabinose ChEBI	+/-	builds acid from
[Ref.: #43709]	L-arabinose ChEBI	+/-	fermentation
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	L-sorbose ChEBI	-	builds acid from
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	L-xylose ChEBI	-	builds acid from
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	lactose ChEBI	+/-	builds acid from
[Ref.: #43709]	lactose ChEBI	+/-	fermentation
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	melezitose ChEBI	-	builds acid from
[Ref.: #43709]	melezitose ChEBI	-	fermentation
[Ref.: #43709]	melibiose ChEBI	+	builds acid from
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #43709]	methyl alpha-D-glucopyranoside ChEBI	+	fermentation
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from
[Ref.: #43709]	methyl beta-D-xylopyranoside ChEBI	+	fermentation
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	milk	+	growth
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	N-acetylglucosamine ChEBI	+/-	builds acid from
[Ref.: #43709]	N-acetylglucosamine ChEBI	+/-	fermentation
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	nitrate ChEBI	-	reduction
[Ref.: #43709]	potassium 2-dehydro-D-gluconate	+/-	builds acid from
[Ref.: #43709]	potassium 2-dehydro-D-gluconate	+/-	fermentation
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #43709]	potassium 5-dehydro-D-gluconate	+	fermentation
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #43709]	potassium gluconate ChEBI	-	fermentation
[Ref.: #43709]	raffinose ChEBI	+	builds acid from
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	ribitol ChEBI	+/-	builds acid from
[Ref.: #43709]	ribitol ChEBI	+/-	fermentation
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43709]	salicin ChEBI	+	builds acid from
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	trehalose ChEBI	+/-	builds acid from
[Ref.: #43709]	trehalose ChEBI	+/-	fermentation
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43709]	turanose ChEBI	+	builds acid from
[Ref.: #43709]	turanose ChEBI	+	fermentation
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43709]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43709]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43709]	alpha-arabinosidase	-	3.2.1.55
[Ref.: #43709]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43709]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43709]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43709]	arginine arylamidase	+
[Ref.: #43709]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43709]	beta-galactosidase	+	3.2.1.23
[Ref.: #43709]	beta-glucosidase	+	3.2.1.21
[Ref.: #43709]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43709]	catalase	-	1.11.1.6
[Ref.: #43709]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43709]	glutamyl-glutamate arylamidase	-
[Ref.: #43709]	glycin arylamidase	+
[Ref.: #43709]	histidine arylamidase	+
[Ref.: #43709]	leucine arylamidase	+	3.4.11.1
[Ref.: #43709]	leucyl glycin arylamidase	+/-	3.4.11.1
[Ref.: #43709]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43709]	phenylalanine arylamidase	+
[Ref.: #43709]	proline-arylamidase	+	3.4.11.5
[Ref.: #43709]	pyroglutamic acid arylamidase	-
[Ref.: #43709]	serine arylamidase	+
[Ref.: #43709]	tyrosine arylamidase	+
[Ref.: #43709]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #24243]	14876	-	-	-	-	+	+	+	-	-	+	+	+	+	+	-	-	-	-	+	-	-	+	+	+	+	+	+	+	+	-	+	+	+	-	+/-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	+

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	peptidoglycan biosynthesis	93.33	14 of 15
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	palmitate biosynthesis	77.27	17 of 22
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	NAD metabolism	66.67	12 of 18
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	purine metabolism	62.77	59 of 94
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	oxidative phosphorylation	60.44	55 of 91
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	glycolysis	58.82	10 of 17
[Ref.: #66794]	pyrimidine metabolism	57.78	26 of 45
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	glutamate and glutamine metabolism	57.14	16 of 28
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	histidine metabolism	55.17	16 of 29
[Ref.: #66794]	leucine metabolism	53.85	7 of 13
[Ref.: #66794]	degradation of sugar acids	52	13 of 25
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	citric acid cycle	50	7 of 14
[Ref.: #66794]	tryptophan metabolism	50	19 of 38
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	cysteine metabolism	50	9 of 18
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	coenzyme A metabolism	50	2 of 4
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	alanine metabolism	48.28	14 of 29
[Ref.: #66794]	non-pathway related	47.37	18 of 38
[Ref.: #66794]	degradation of pentoses	46.43	13 of 28
[Ref.: #66794]	arginine metabolism	45.83	11 of 24
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	degradation of hexoses	44.44	8 of 18
[Ref.: #66794]	CO2 fixation in Crenarchaeota	44.44	4 of 9
[Ref.: #66794]	tetrahydrofolate metabolism	42.86	6 of 14
[Ref.: #66794]	isoprenoid biosynthesis	42.31	11 of 26
[Ref.: #66794]	lipid metabolism	41.94	13 of 31
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	urea cycle	38.46	5 of 13
[Ref.: #66794]	lysine metabolism	38.1	16 of 42
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	glutathione metabolism	35.71	5 of 14
[Ref.: #66794]	tyrosine metabolism	35.71	5 of 14
[Ref.: #66794]	polyamine pathway	34.78	8 of 23
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	flavin biosynthesis	33.33	5 of 15
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	propionate fermentation	30	3 of 10
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	reductive acetyl coenzyme A pathway	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	sulfate reduction	23.08	3 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	ascorbate metabolism	22.73	5 of 22
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24243]	Sample type/isolated from	fresh faeces of black lemurs Eulemur macaco housed under semi-natural conditions
[Ref.: #24243]	Host species	Eulemur macaco
[Ref.: #24243]	Geographic location (country and/or sea, region)	Verona, Parco Natura Viva
[Ref.: #24243]	Country	Italy
[Ref.: #24243]	Country ISO 3 Code	ITA
[Ref.: #24243]	Continent	Europe

[Ref.: #43709]	Sample type/isolated from	Fresh fecal sample of an adult black lemur (Eulemur macaco) that was housed under semi-natural conditions
[Ref.: #43709]	Geographic location (country and/or sea, region)	Parco Natura Viva, Verona
[Ref.: #43709]	Country	Italy
[Ref.: #43709]	Country ISO 3 Code	ITA
[Ref.: #43709]	Continent	Europe
[Ref.: #43709]	Isolation date	2014-02

[Ref.: #67770]	Sample type/isolated from	Fecal sample of an adult black lemur (Eulemur macaco) housed under semi-natural conditions in the Parco Natura Viva
[Ref.: #67770]	Host species	Eulemur macaco
[Ref.: #67770]	Geographic location (country and/or sea, region)	Verona, northern Italy
[Ref.: #67770]	Country	Italy
[Ref.: #67770]	Country ISO 3 Code	ITA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Primates
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP979748 (>99% sequence identity) for Bifidobacterium from Microbeatlas

Aquatic Samples	530
Soil Samples	177
Animal Samples	24203
Plant Samples	47
Total Samples	24957

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24243]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24243]	Bifidobacterium eulemuris strain LMM_E3 16S ribosomal RNA gene, partial sequence	KP979748	1398	ENA	1765219 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bifidobacterium eulemuris DSM 100216	GCA_014898155	complete	GenBank	1765219 tax ID	*
[Ref.: #66792]	Bifidobacterium eulemuris DSM 100216	GCA_002259685	contig	GenBank	1765219 tax ID	*
[Ref.: #66792]	Bifidobacterium eulemuris strain DSM 100216	1765219.7	complete	PATRIC	1765219 tax ID	*
[Ref.: #66792]	Bifidobacterium eulemuris strain DSM 100216	1765219.3	wgs	PATRIC	1765219 tax ID	*
[Ref.: #66792]	Bifidobacterium eulemuris DSM 100216	2791355248	draft	JGI IMG/M	1765219 tax ID	*

[Ref.: #24243]

GC-content

62.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bifidobacterium eulemuris DSM 100216 NCBI: GCA_014898155.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium eulemuris DSM 100216 NCBI: GCA_014898155.1
[Ref.: #69480]	flagellated	no	97.331	yes
[Ref.: #69480]	gram-positive	yes	92.666	yes
[Ref.: #69480]	anaerobic	yes	96.873	no
[Ref.: #69480]	aerobic	no	96.665	yes
[Ref.: #69480]	halophile	no	86.356	no
[Ref.: #69480]	spore-forming	no	95.495	no
[Ref.: #69480]	glucose-util	yes	89.42	no
[Ref.: #69480]	thermophile	no	97.798	no
[Ref.: #69480]	motile	no	94.525	yes
[Ref.: #69480]	glucose-ferment	yes	79.963	no

Availability in culture collections External links

[Ref.: #24243]

Culture collection no.

DSM 100216, JCM 30801

[Ref.: #90792]

SI-ID 400372

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bifidobacterium eulemuris sp. nov., isolated from faeces of black lemurs (Eulemur macaco).	Michelini S, Modesto M, Pisi AM, Filippini G, Sandri C, Spiezio C, Biavati B, Sgorbati B, Mattarelli P	Int J Syst Evol Microbiol	10.1099/ijsem.0.000924	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24243

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100216

#43709

Samanta Michelini, Monica Modesto, Anna Maria Pisi, Gianfranco Filippini, Camillo Sandri, Caterina Spiezio, Bruno Biavati, Barbara Sgorbati, Paola Mattarelli: Bifidobacterium eulemuris sp. nov., isolated from faeces of black lemurs (Eulemur macaco). IJSEM 66: 1567 - 1576 2016 ( DOI 10.1099/ijsem.0.000924 , PubMed 26823373 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90792

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400372.1 )

* These data were automatically processed and therefore are not curated

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Bifidobacterium eulemuris DSM 100216

Bifidobacterium eulemuris DSM 100216

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