Name: Agathobacter ruminis JK 623
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132395

Type strain:

Species: Agathobacter ruminis

Strain Designation: JK 623

Culture col. no.: DSM 29029, LMG 28559

Strain history: <- J. Killer, Inst. Animal Physiol. and Genetics, Czech Acad. Sci., Prague; JK 623 <- J. Kopecny

NCBI tax ID(s): 1712665 (species)

SI-ID 396458

LMG 28559, DSM 29029

Section

Agathobacter ruminis JK 623 is an obligate anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from rumen fluid of sheep.

colony-forming
Gram-negative
motile
rod-shaped
obligate anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Agathobacter*
	Species	**Agathobacter ruminis**
	Full Scientific Name (LPSN)	Agathobacter ruminis Rosero et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43769]	Gram stain	negative

[Ref.: #43769]	Cell length	1.5-2.1 µm

[Ref.: #43769]	Cell width	0.3-0.4 µm

[Ref.: #43769]	Cell shape	rod-shaped

[Ref.: #43769]	Motility	yes

[Ref.: #43769]	Flagellum arrangement	monotrichous, polar

[Ref.: #43769]	Colony size	3-4 mm
[Ref.: #43769]	Colony color	White
[Ref.: #43769]	Colony shape	circular
[Ref.: #43769]	Incubation period	2 days
[Ref.: #43769]	Cultivation medium used	M10 agar medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43769]

Culture medium

M10 agar medium

[Ref.: #43769]

Culture medium growth

[Ref.: #24184]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #24184]

Culture medium growth

[Ref.: #24184]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24184]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24184]	growth	37 °C
[Ref.: #43769]	growth	25-45 °C
[Ref.: #43769]	optimum	35-39 °C

[Ref.: #24184]	Temperature range	mesophilic
[Ref.: #43769]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43769]			optimum	7
[Ref.: #43769]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43769]

Oxygen tolerance

obligate anaerobe

[Ref.: #43769]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43769]	amygdalin ChEBI	+	builds acid from
[Ref.: #43769]	arbutin ChEBI	+	builds acid from
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #43769]	cellobiose ChEBI	+	builds acid from
[Ref.: #43769]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43769]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43769]	D-fructose ChEBI	+	builds acid from
[Ref.: #43769]	D-fucose ChEBI	-	builds acid from
[Ref.: #43769]	D-glucose ChEBI	+	builds acid from
[Ref.: #43769]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43769]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43769]	D-mannose ChEBI	-	builds acid from
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #43769]	D-ribose ChEBI	-	builds acid from
[Ref.: #43769]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43769]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43769]	erythritol ChEBI	-	builds acid from
[Ref.: #43769]	esculin ChEBI	+	hydrolysis
[Ref.: #43769]	galactitol ChEBI	-	builds acid from
[Ref.: #43769]	gelatin ChEBI	+	hydrolysis
[Ref.: #43769]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43769]	glycerol 3-phosphate ChEBI	-	builds acid from
[Ref.: #43769]	glycogen ChEBI	+	builds acid from
[Ref.: #43769]	inulin ChEBI	+	builds acid from
[Ref.: #43769]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43769]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43769]	L-fucose ChEBI	-	builds acid from
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #43769]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43769]	L-xylose ChEBI	-	builds acid from
[Ref.: #43769]	lactose ChEBI	-	builds acid from
[Ref.: #43769]	maltose hydrate	+	builds acid from
[Ref.: #43769]	melezitose ChEBI	-	builds acid from
[Ref.: #43769]	melibiose ChEBI	-	builds acid from
[Ref.: #43769]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43769]	methyl D-glucoside ChEBI	-	builds acid from
[Ref.: #43769]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43769]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #43769]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #43769]	raffinose ChEBI	-	builds acid from
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #43769]	rhamnose ChEBI	+	builds acid from
[Ref.: #43769]	ribitol ChEBI	-	builds acid from
[Ref.: #43769]	salicin ChEBI	-	builds acid from
[Ref.: #43769]	sucrose ChEBI	+	builds acid from
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #43769]	turanose ChEBI	-	builds acid from
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #43769]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #43769]	catalase	-	1.11.1.6
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #43769]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #24184]	12841	-	-	+	+	-	+	+/-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	degradation of sugar alcohols	75	12 of 16
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	vitamin B12 metabolism	70.59	24 of 34
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	polyamine pathway	69.57	16 of 23
[Ref.: #66794]	purine metabolism	69.15	65 of 94
[Ref.: #66794]	glutamate and glutamine metabolism	67.86	19 of 28
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	degradation of hexoses	66.67	12 of 18
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	methylglyoxal degradation	60	3 of 5
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	histidine metabolism	58.62	17 of 29
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	leucine metabolism	53.85	7 of 13
[Ref.: #66794]	degradation of pentoses	53.57	15 of 28
[Ref.: #66794]	tryptophan metabolism	52.63	20 of 38
[Ref.: #66794]	lipid metabolism	51.61	16 of 31
[Ref.: #66794]	Entner Doudoroff pathway	50	5 of 10
[Ref.: #66794]	citric acid cycle	50	7 of 14
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	lysine metabolism	47.62	20 of 42
[Ref.: #66794]	non-pathway related	47.37	18 of 38
[Ref.: #66794]	oxidative phosphorylation	47.25	43 of 91
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	arginine metabolism	41.67	10 of 24
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	40	4 of 10
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	isoprenoid biosynthesis	38.46	10 of 26
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	pentose phosphate pathway	36.36	4 of 11
[Ref.: #66794]	molybdenum cofactor biosynthesis	33.33	3 of 9
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	allantoin degradation	33.33	3 of 9
[Ref.: #66794]	sulfate reduction	30.77	4 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	tyrosine metabolism	28.57	4 of 14
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	ascorbate metabolism	27.27	6 of 22
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	degradation of sugar acids	24	6 of 25
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	heme metabolism	21.43	3 of 14
[Ref.: #66794]	glutathione metabolism	21.43	3 of 14
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24184]	Sample type/isolated from	rumen fluid of sheep
[Ref.: #24184]	Geographic location (country and/or sea, region)	Central Bohemia
[Ref.: #24184]	Country	Czech Republic
[Ref.: #24184]	Country ISO 3 Code	CZE
[Ref.: #24184]	Continent	Europe

[Ref.: #43769]	Sample type/isolated from	The rumen fluid of sheep grazing in a semi-natural meadow
[Ref.: #43769]	Geographic location (country and/or sea, region)	Bohemia
[Ref.: #43769]	Country	Czech Republic
[Ref.: #43769]	Country ISO 3 Code	CZE
[Ref.: #43769]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Meadow
#Host	#Mammals	#Caprinae (Sheep/Goat)
#Host Body Product	#Fluids	#Rumen fluid
#Host Body-Site	#Organ	#Rumen

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT229569 (>99% sequence identity) for Agathobacter ruminis subclade from Microbeatlas

Aquatic Samples	43
Soil Samples	67
Animal Samples	7857
Plant Samples	170
Total Samples	8137

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24184]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24184]	Agathobacter ruminis strain JK623 16S ribosomal RNA gene, partial sequence	KT229569	1434	ENA	1712665 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Agathobacter ruminis DSM 29029	GCA_028539255	contig	GenBank	1712665 tax ID	*

[Ref.: #24184]

GC-content

41.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Agathobacter ruminis DSM 29029 NCBI: GCA_028539255.1
[Ref.: #69480]	motile	yes	85.415	yes
[Ref.: #69480]	flagellated	no	56.698	no
[Ref.: #69480]	gram-positive	yes	57.109	yes
[Ref.: #69480]	anaerobic	yes	99.556	no
[Ref.: #69480]	aerobic	no	99.168	yes
[Ref.: #69480]	halophile	no	89.501	no
[Ref.: #69480]	spore-forming	yes	59.122	no
[Ref.: #69480]	glucose-ferment	yes	71.098	no
[Ref.: #69480]	thermophile	no	91.816	yes
[Ref.: #69480]	glucose-util	yes	87.102	no

Availability in culture collections External links

[Ref.: #24184]

Culture collection no.

DSM 29029, LMG 28559

[Ref.: #90737]

SI-ID 396458

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Eubacterium rectale (Hauduroy et al. 1937) Prevot 1938 in a new genus Agathobacter gen. nov. as Agathobacter rectalis comb. nov., and description of Agathobacter ruminis sp. nov., isolated from the rumen contents of sheep and cows.	Rosero JA, Killer J, Sechovcova H, Mrazek J, Benada O, Fliegerova K, Havlik J, Kopecny J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000788	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24184

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29029

#43769

Jaime A. Rosero, Jirí Killer, Hana Sechovcova, Jakub Mrázek, Oldrich Benada, Katerina Fliegerová, Jaroslav Havlí´k, Jan Kopecný: Reclassification of Eubacterium rectale (Hauduroy et al. 1937) Prévot 1938 in a new genus Agathobacter gen. nov. as Agathobacter rectalis comb. nov., and description of Agathobacter ruminis sp. nov., isolated from the rumen contents of sheep and cows. IJSEM 66: 768 - 773 2016 ( DOI 10.1099/ijsem.0.000788 , PubMed 26619944 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90737

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396458.1 )

* These data were automatically processed and therefore are not curated

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Agathobacter ruminis DSM 29029

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