Name: Arenimonas metalli CF5-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24669

Type strain:

Species: Arenimonas metalli

Strain Designation: CF5-1

Culture col. no.: DSM 27855, CCTCC AB 2010449, CGMCC 1.10787, KCTC 23460, KCTC 23904

Strain history: <- F Chen, Huzhong Agri. Univ., China

NCBI tax ID(s): 948077 (species)

SI-ID 403240

DSM 27855

Section

Arenimonas metalli CF5-1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from From copper- iron mining powder, Hongshan iron mine.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Arenimonas*
	Species	**Arenimonas metalli**
	Full Scientific Name (LPSN)	Arenimonas metalli Chen et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30350]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #30350]	Cell length	1.1 µm

[Ref.: #30350]	Cell width	0.45 µm

[Ref.: #30350]	Cell shape	rod-shaped

[Ref.: #30350]	Motility	no

[Ref.: #30350]

Pigment production

yes

Multimedia content

[Ref.: #20312]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20312]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #20312]

Culture medium growth

[Ref.: #20312]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20312]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20312]	growth	28 °C
[Ref.: #30350]	growth	04-37 °C
[Ref.: #30350]	optimum	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #20312]	Temperature range	mesophilic
[Ref.: #30350]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30350]			optimum	8
[Ref.: #30350]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30350]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #30350]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30350]		NaCl		growth	0-1	%

[Ref.: #67771]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30350]	glutamate ChEBI	+	carbon source
[Ref.: #30350]	L-alaninamide ChEBI	+	carbon source
[Ref.: #30350]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30350]	proline ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30350]	acid phosphatase	+	3.1.3.2
[Ref.: #30350]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30350]	catalase	+	1.11.1.6
[Ref.: #30350]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30350]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From copper- iron mining powder, Hongshan iron mine
[Ref.: #67771]	Geographic location (country and/or sea, region)	Daye city, Hubei province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #20312]	Sample type/isolated from	copper-iron mining powder
[Ref.: #20312]	Geographic location (country and/or sea, region)	Hubei province, Daye city, Hongshan iron mine
[Ref.: #20312]	Country	China
[Ref.: #20312]	Country ISO 3 Code	CHN
[Ref.: #20312]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ698842 (>99% sequence identity) for Arenimonas metalli from Microbeatlas

Aquatic Samples	849
Soil Samples	569
Animal Samples	242
Plant Samples	38
Total Samples	1698

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20312]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20312]	Arenimonas metalli CF5-1 16S ribosomal RNA gene, partial sequence	HQ698842	1506	ENA	1384056 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Arenimonas metalli CF5-1	GCA_000747155	contig	GenBank	1384056 tax ID	*
[Ref.: #66792]	Arenimonas metalli CF5-1	1384056.3	wgs	PATRIC	1384056 tax ID	*
[Ref.: #66792]	Arenimonas metalli CF5-1	2645728050	draft	JGI IMG/M	1384056 tax ID	*

[Ref.: #20312]

GC-content

70.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Arenimonas metalli CF5-1 PATRIC: 1384056.3
[Ref.: #69480]	motile	no	87.682	yes
[Ref.: #69480]	gram-positive	no	98.479	yes
[Ref.: #69480]	anaerobic	no	99.056	yes
[Ref.: #69480]	halophile	no	91.999	yes
[Ref.: #69480]	spore-forming	no	98.142	yes
[Ref.: #69480]	glucose-util	yes	82.632	no
[Ref.: #69480]	thermophile	no	98.631	no
[Ref.: #69480]	aerobic	yes	88.163	yes
[Ref.: #69480]	flagellated	no	95.024	yes
[Ref.: #69480]	glucose-ferment	no	90.002	no

Availability in culture collections External links

[Ref.: #20312]

Culture collection no.

DSM 27855, CCTCC AB 2010449, CGMCC 1.10787, KCTC 23460, KCTC 23904

[Ref.: #88508]

SI-ID 403240

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arenimonas alkanexedens sp. nov., isolated from a frozen soil sample.	Zhu J, Wang HM, Zhang Q, Dong WW, Kong DL, Wang YW, Song JL, Jiang X, Zhao SM, Zhang W, Ruan ZY	Antonie Van Leeuwenhoek	10.1007/s10482-017-0876-9	2017	*
Phylogeny	Arenimonas daechungensis sp. nov., isolated from the sediment of a eutrophic reservoir.	Huy H, Jin L, Lee YK, Lee KC, Lee JS, Yoon JH, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijs.0.035410-0	2012	*
Phylogeny	Arenimonas metalli sp. nov., isolated from an iron mine.	Chen F, Shi Z, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.034132-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20312

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27855

#30350

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26691 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88508

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403240.1 )

#26691

IJSEM 1744 2012 ( DOI 10.1099/ijs.0.034132-0 , PubMed 21930678 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Arenimonas metalli in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF