Name: Bhargavaea cecembensis DSE10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12011

Type strain:

Species: Bhargavaea cecembensis

Strain Designation: DSE10

Culture col. no.: DSM 22132, JCM 14375, LMG 24411

Strain history: S. Shivaji DSE10.

NCBI tax ID(s): 394098 (species)

SI-ID 323184

LMG24411, JCM 14375

Section

Bhargavaea cecembensis DSE10 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from Deep-sea sediments.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Bhargavaea*
	Species	**Bhargavaea cecembensis**
	Full Scientific Name (LPSN)	Bhargavaea cecembensis Manorama et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #28963]	Gram stain	positive

[Ref.: #28963]	Cell length	6 µm

[Ref.: #28963]	Cell width	2 µm

[Ref.: #28963]	Cell shape	rod-shaped

[Ref.: #28963]	Motility	no

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #28963]	growth	15-55 °C
[Ref.: #28963]	optimum	37 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #28963]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #28963]			growth	7-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #28963]

Oxygen tolerance

aerobe

[Ref.: #28963]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #28963]		NaCl		growth	<6	%

[Ref.: #16151]	Murein short key	A31
[Ref.: #16151]	Murein types	A1gamma m-Dpm-direct

[Ref.: #67770]

Observation

quinones: MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28963]	maltose ChEBI	+	carbon source
[Ref.: #28963]	nitrate ChEBI	+	reduction
[Ref.: #28963]	ribitol ChEBI	+	carbon source
[Ref.: #28963]	tween 60 ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #28963]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #28963]	catalase	+	1.11.1.6
[Ref.: #28963]	cytochrome oxidase	+	1.9.3.1
[Ref.: #28963]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16151]	Sample type/isolated from	Deep-sea sediments
[Ref.: #16151]	Geographic location (country and/or sea, region)	Indian Ocean, Chagos–Laccadive ridge system, 111060 S, 721310 E
[Ref.: #16151]	Country	India
[Ref.: #16151]	Country ISO 3 Code	IND
[Ref.: #16151]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Deep-sea sediment sample collected from the Chagos-Laccadive ridge system (111060 S, 721310 E)
[Ref.: #67770]	Country	Indian Ocean
[Ref.: #67770]	Geographic location	1.1106°/72.1310°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM286423 (>99% sequence identity) for Bhargavaea from Microbeatlas

Aquatic Samples	273
Soil Samples	871
Animal Samples	344
Plant Samples	219
Total Samples	1707

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16151]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16151]	Bhargavaea cecembensis partial 16S rRNA gene, type strain DSE10T	AM286423	1544	ENA	394098 tax ID
[Ref.: #20218]	Bhargavaea cecembensis strain DSE10 16S ribosomal RNA gene, partial sequence	HQ424469	1516	ENA	394098 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bhargavaea cecembensis DSE10	GCA_000348905	contig	GenBank	1235279 tax ID
[Ref.: #66792]	Bhargavaea cecembensis DSE10	1235279.3	wgs	PATRIC	1235279 tax ID	*
[Ref.: #66792]	Bhargavaea cecembensis DSE10	2537561877	draft	JGI IMG/M	1235279 tax ID	*

[Ref.: #16151]	GC-content	53.7 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #16151]	GC-content	59.5 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #28963]	GC-content	59.5 mol%
[Ref.: #67770]	GC-content	57-62 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bhargavaea cecembensis DSE10 PATRIC: 1235279.3
[Ref.: #69480]	motile	no	87.777	no
[Ref.: #69480]	gram-positive	yes	92.693	yes
[Ref.: #69480]	anaerobic	no	99.243	yes
[Ref.: #69480]	aerobic	yes	95.043	yes
[Ref.: #69480]	halophile	yes	90.194	yes
[Ref.: #69480]	spore-forming	yes	64.529	no
[Ref.: #69480]	glucose-util	yes	85.544	no
[Ref.: #69480]	flagellated	no	93.174	no
[Ref.: #69480]	thermophile	no	99.313	yes
[Ref.: #69480]	glucose-ferment	no	89.318	no

Availability in culture collections External links

[Ref.: #16151]

Culture collection no.

DSM 22132, JCM 14375, LMG 24411

[Ref.: #81230]

SI-ID 323184

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pradoshia eiseniae gen. nov., sp. nov., a spore-forming member of the family Bacillaceae capable of assimilating 3-nitropropionic acid, isolated from the anterior gut of the earthworm Eisenia fetida.	Saha T, Ranjan VK, Ganguli S, Thakur S, Chakraborty B, Barman P, Ghosh W, Chakraborty R	Int J Syst Evol Microbiol	10.1099/ijsem.0.003304	2019	*
Phylogeny	Bhargavaea changchunensis sp. nov. isolated from soil in China.	Tian FH, Fan DY, Zhang C, Jia CW, Gao W, Li Y, Li CT	Arch Microbiol	10.1007/s00203-018-1563-6	2018	*
Genetics	Draft Genome Sequence of Bhargavaea cecembensis Strain DSE10T, Isolated from a Deep-Sea Sediment Sample Collected at a Depth of 5,904 m from the Chagos-Laccadive Ridge System in the Indian Ocean.	Shivaji S, Ara S, Begum Z, Ruth M, Singh A, Kumar Pinnaka A	Genome Announc	10.1128/genomeA.00346-13	2013	*
Phylogeny	Bhargavaea ullalensis sp. nov., isolated from coastal sand.	Glaeser SP, Arun AB, Rekha PD, Prabhu S, Busse HJ, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.045062-0	2012	*
Phylogeny	Reclassification of Bacillus beijingensis Qiu et al. 2009 and Bacillus ginsengi Qiu et al. 2009 as Bhargavaea beijingensis comb. nov. and Bhargavaea ginsengi comb. nov. and emended description of the genus Bhargavaea.	Verma P, Pandey PK, Gupta AK, Seong CN, Park SC, Choe HN, Baik KS, Patole MS, Shouche YS	Int J Syst Evol Microbiol	10.1099/ijs.0.034850-0	2011	*
Phylogeny	Bhargavaea cecembensis gen. nov., sp. nov., isolated from the Chagos-Laccadive ridge system in the Indian Ocean.	Manorama R, Pindi PK, Reddy GS, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.002691-0	2009	*

References

#16151

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22132

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#28963

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25400 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#81230

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID323184.1 )

#25400

IJSEM 2618 2009 ( DOI 10.1099/ijs.0.002691-0 , PubMed 19625444 )

* These data were automatically processed and therefore are not curated

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