Name: Arcobacter mytili F2075
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2098

Type strain:

Species: Arcobacter mytili

Strain Designation: F2075

Culture col. no.: DSM 23625, CECT 7386, LMG 24559, CIP 110066

Strain history: CIP <- 2009, M.J. Figueras, Rovira Univ., Reus, Spain: strain F2075

NCBI tax ID(s): 1032238 (strain), 603050 (species)

SI-ID 360196

LMG 24559, CECT 7386, CIP 110066, DSM 23625

Section

Arcobacter mytili F2075 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from mussel.

Gram-negative
motile
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Arcobacteraceae*
	Genus	*Arcobacter*
	Species	**Arcobacter mytili**
	Full Scientific Name (LPSN)	Arcobacter mytili Collado et al. 2009

	Synonym	Malacobacter mytili
	Synonym	Malaciobacter mytili

Information on morphological and physiological properties Morphology

[Ref.: #29010]	Gram stain	negative
[Ref.: #121216]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #29010]	Cell length	2 µm

[Ref.: #29010]	Cell width	0.5 µm

[Ref.: #29010]	Cell shape	rod-shaped
[Ref.: #121216]	Cell shape	rod-shaped

[Ref.: #29010]	Motility	yes
[Ref.: #121216]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %95.899

[Ref.: #17185]	Type of hemolysis	gamma
[Ref.: #17185]	Incubation period	1-2 days

[Ref.: #29010]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17185]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #17185]

Culture medium growth

[Ref.: #17185]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17185]

Culture medium composition

expand / minimize

[Ref.: #37910]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #37910]

Culture medium growth

[Ref.: #37910]

Culture medium composition

expand / minimize

[Ref.: #121216]

Culture medium

CIP Medium 6

[Ref.: #121216]

Culture medium growth

[Ref.: #121216]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17185]	growth	37 °C
[Ref.: #29010]	growth	18-42 °C
[Ref.: #29010]	optimum	30 °C
[Ref.: #37910]	growth	30 °C

[Ref.: #17185]	Temperature range	mesophilic
[Ref.: #29010]	Temperature range	mesophilic
[Ref.: #37910]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #17185]	Oxygen tolerance	microaerophile
[Ref.: #29010]	Oxygen tolerance	aerobe

[Ref.: #29010]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29010]		NaCl		growth	2.0-4.0	%
[Ref.: #29010]		NaCl		optimum	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121216]	nitrate ChEBI	+	reduction
[Ref.: #68373]	nitrate ChEBI	-	reduction	* from API CAM
[Ref.: #121216]	nitrite ChEBI	+	reduction
[Ref.: #68373]	triphenyltetrazolium chloride ChEBI	-	reduction	* from API CAM
[Ref.: #68373]	urea ChEBI	-	hydrolysis	* from API CAM

	Metabolite production	Metabolite	Production
[Ref.: #121216]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #29010]	catalase	+	1.11.1.6
[Ref.: #121216]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29010]	cytochrome oxidase	+	1.9.3.1
[Ref.: #17185]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68373]	esterase	-		* from API CAM
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68373]	gamma-glutamyltransferase	-	2.3.2.2	* from API CAM
[Ref.: #68373]	L-arginine arylamidase	-		* from API CAM
[Ref.: #68373]	L-aspartate arylamidase	-	3.4.11.21	* from API CAM
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121216]	oxidase	+
[Ref.: #68373]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API CAM
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121216]	urease	-	3.5.1.5
[Ref.: #68373]	urease	-	3.5.1.5	* from API CAM
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® CAM:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Reduction of nitrateNIT	EsteraseEST	Hippuric acidHIP	gamma-Glutamyl transferaseGGT	Reduction of Triphenyl tetrazolium chlorideTTC	Pyrrolidonyl arylamidasePYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	Alkaline phosphatasePAL	H2S productionH2S	Assimilation of D-glucoseGLU	Assimilation of succinateSUT	Growth inhibitionNAL	Growth inhibitionCFZ	Assimilation of acetateACE	Assimilation of propionic acidPROP	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Erythromycin resistance (+) sensitivity (-)ERO	CatalaseCAT
[Ref.: #17185]	3796	-	-	-	+/-	-	-	-	-	-	+/-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121216]	12339	-	+	+	+	-	-	-	-	-	-	+	+	-	-	+	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17185]	Sample type/isolated from	mussel
[Ref.: #17185]	Geographic location (country and/or sea, region)	Catalonia
[Ref.: #17185]	Country	Spain
[Ref.: #17185]	Country ISO 3 Code	ESP
[Ref.: #17185]	Continent	Europe

[Ref.: #121216]	Sample type/isolated from	Mussels
[Ref.: #121216]	Geographic location (country and/or sea, region)	Catalonia
[Ref.: #121216]	Country	Spain
[Ref.: #121216]	Country ISO 3 Code	ESP
[Ref.: #121216]	Continent	Europe
[Ref.: #121216]	Isolation date	2006
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU669904 (>99% sequence identity) for Malaciobacter mytili subclade from Microbeatlas

Aquatic Samples	1238
Soil Samples	116
Animal Samples	400
Plant Samples	18
Total Samples	1772

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17185]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121216]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17185]	Arcobacter mytili strain F2075 16S ribosomal RNA gene, partial sequence	EU669904	1464	ENA	1032238 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Malaciobacter mytili LMG 24559	GCA_003346775	complete	GenBank	1032238 tax ID	*
[Ref.: #66792]	Malaciobacter mytili LMG 24559 CECT 7386	GCA_004116555	contig	GenBank	1032238 tax ID	*
[Ref.: #66792]	Arcobacter mytili LMG 24559	1032238.5	complete	PATRIC	1032238 tax ID	*
[Ref.: #66792]	Arcobacter mytili LMG 24559 strain CECT 7386	1032238.6	wgs	PATRIC	1032238 tax ID	*
[Ref.: #66792]	Arcobacter mytili LMG 24559 CECT 7386	2871078930	draft	JGI IMG/M	1032238 tax ID	*
[Ref.: #66792]	Arcobacter mytili F2075, LMG 24559	2795385496	complete	JGI IMG/M	1032238 tax ID	*

[Ref.: #17185]	GC-content	26.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29010]	GC-content	26.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Malaciobacter mytili LMG 24559 LMG 24559 NCBI: GCA_003346775.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Malaciobacter mytili LMG 24559 LMG 24559 NCBI: GCA_003346775.1
[Ref.: #69480]	motile	yes	89.662	no
[Ref.: #69480]	flagellated	yes	84.802	no
[Ref.: #69480]	gram-positive	no	98.59	yes
[Ref.: #69480]	anaerobic	no	71.756	no
[Ref.: #69480]	aerobic	no	90.814	no
[Ref.: #69480]	halophile	no	79.754	no
[Ref.: #69480]	spore-forming	no	92.486	yes
[Ref.: #69480]	glucose-util	no	85.254	no
[Ref.: #69480]	thermophile	no	95.909	yes
[Ref.: #69480]	glucose-ferment	no	90.24	no

Availability in culture collections External links

[Ref.: #17185]

Culture collection no.

DSM 23625, CECT 7386, LMG 24559, CIP 110066

[Ref.: #71745]

SI-ID 360196

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of the Arcobacter mytili Type Strain LMG 24559.	Miller WG, Yee E, Bono JL	Microbiol Resour Announc	10.1128/MRA.01078-18	2018	*
Phylogeny	Arcobacter mytili sp. nov., an indoxyl acetate-hydrolysis-negative bacterium isolated from mussels.	Collado L, Cleenwerck I, Van Trappen S, De Vos P, Figueras MJ	Int J Syst Evol Microbiol	10.1099/ijs.0.003749-0	2009	*

References

#17185

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23625

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29010

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25442 (see below)

#37910 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68373

Automatically annotated from API CAM .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71745

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID360196.1 )

#121216 Collection of Institut Pasteur ; Curators of the CIP; CIP 110066

#25442

IJSEM 1391 2009 ( DOI 10.1099/ijs.0.003749-0 , PubMed 19502322 )

* These data were automatically processed and therefore are not curated

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Malaciobacter mytili LMG 24559 LMG 24559

Malaciobacter mytili LMG 24559 LMG 24559

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