Name: Leisingera aquimarina R-26159
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13670

Type strain:

Species: Leisingera aquimarina

Strain Designation: R-26159

Culture col. no.: DSM 24565, CCUG 55860, LMG 24366

Strain history: <- CCUG <- LMG <- <- I. Vandecandelaere, Lab. Microbiology, Ghent Univ., Belgium

NCBI tax ID(s): 999611 (strain), 476529 (species)

SI-ID 343774

LMG 24366, CCUG 55860, DSM 24565

Section

Leisingera aquimarina R-26159 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from Marine biofilm on stainless steel electrode.

Gram-negative
motile
ovoid-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Leisingera*
	Species	**Leisingera aquimarina**
	Full Scientific Name (LPSN)	Leisingera aquimarina Vandecandelaere et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32650]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #32650]	Cell length	1.4 µm

[Ref.: #32650]	Cell width	1 µm

[Ref.: #32650]	Cell shape	ovoid-shaped

[Ref.: #32650]	Motility	yes

[Ref.: #17697]	Incubation period	3-7 days

[Ref.: #60764]	Incubation period	2-3 days

[Ref.: #32650]

Pigment production

yes

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17697]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17697]

Culture medium growth

[Ref.: #17697]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17697]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17697]	growth	20 °C
[Ref.: #32650]	growth	04-37 °C
[Ref.: #32650]	optimum	30 °C
[Ref.: #60764]	growth	20 °C

[Ref.: #17697]	Temperature range	psychrophilic
[Ref.: #32650]	Temperature range	mesophilic
[Ref.: #60764]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #32650]			optimum	6.5-8
[Ref.: #32650]			growth	5.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32650]	Oxygen tolerance	aerobe
[Ref.: #60764]	Oxygen tolerance	aerobe

[Ref.: #32650]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32650]		NaCl		growth	01-07	%
[Ref.: #32650]		NaCl		optimum	01-07	%

[Ref.: #32650]

Observation

aggregates in chains

	Enzyme	Enzyme activity	EC number
[Ref.: #32650]	alkaline phosphatase	+	3.1.3.1
[Ref.: #17697]	catalase	+	1.11.1.6
[Ref.: #32650]	catalase	+	1.11.1.6
[Ref.: #32650]	cytochrome oxidase	+	1.9.3.1
[Ref.: #17697]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #32650]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17697]	Sample type/isolated from	Marine biofilm on stainless steel electrode
[Ref.: #17697]	Geographic location (country and/or sea, region)	Genoa, harbour
[Ref.: #17697]	Country	Italy
[Ref.: #17697]	Country ISO 3 Code	ITA
[Ref.: #17697]	Continent	Europe

[Ref.: #60764]	Sample type/isolated from	Marine biofilm on stainless steel electrode
[Ref.: #60764]	Sampling date	2004-10-01
[Ref.: #60764]	Geographic location (country and/or sea, region)	Genoa,the harbour
[Ref.: #60764]	Country	Italy
[Ref.: #60764]	Country ISO 3 Code	ITA
[Ref.: #60764]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Environmental	#Aquatic	#Marine
#Environmental	#Biofilm	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM900415 (>99% sequence identity) for Leisingera from Microbeatlas

Aquatic Samples	358
Soil Samples	32
Animal Samples	114
Plant Samples	6
Total Samples	510

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17697]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17697]	Leisingera aquimarina partial 16S rRNA gene, type strain LMG 24366T	AM900415	1396	ENA	476529 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Leisingera aquimarina DSM 24565	GCA_000473165	scaffold	GenBank	999611 tax ID	*
[Ref.: #66792]	Leisingera aquimarina DSM 24565	999611.3	wgs	PATRIC	999611 tax ID	*
[Ref.: #66792]	Leisingera aquimarina DSM 24565	2521172617	draft	JGI IMG/M	999611 tax ID	*

[Ref.: #17697]

GC-content

61.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Leisingera aquimarina DSM 24565 DSM 24565 NCBI: GCA_000473165.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leisingera aquimarina DSM 24565 DSM 24565 NCBI: GCA_000473165.1
[Ref.: #69480]	motile	yes	82.57	yes
[Ref.: #69480]	flagellated	no	73.925	no
[Ref.: #69480]	gram-positive	no	98.536	yes
[Ref.: #69480]	anaerobic	no	98.99	no
[Ref.: #69480]	aerobic	yes	93.112	yes
[Ref.: #69480]	halophile	yes	80.641	no
[Ref.: #69480]	spore-forming	no	95.418	yes
[Ref.: #69480]	thermophile	no	97.199	yes
[Ref.: #69480]	glucose-util	yes	66.912	no
[Ref.: #69480]	glucose-ferment	no	91.15	no

Availability in culture collections External links

[Ref.: #17697]

Culture collection no.

DSM 24565, CCUG 55860, LMG 24366

[Ref.: #82853]

SI-ID 343774

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequence of the Leisingera aquimarina type strain (DSM 24565(T)), a member of the marine Roseobacter clade rich in extrachromosomal elements.	Riedel T, Teshima H, Petersen J, Fiebig A, Davenport K, Daligault H, Erkkila T, Gu W, Munk C, Xu Y, Chen A, Pati A, Ivanova N, Goodwin LA, Chain P, Detter JC, Rohde M, Gronow S, Kyrpides NC, Woyke T, Goker M, Brinkhoff T, Klenk HP	Stand Genomic Sci	10.4056/sigs.3858183	2013	*
Phylogeny	Leisingera nanhaiensis sp. nov., isolated from marine sediment.	Sun F, Wang B, Liu X, Lai Q, Du Y, Li G, Luo J, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.010439-0	2009	*
Phylogeny	Leisingera aquimarina sp. nov., isolated from a marine electroactive biofilm, and emended descriptions of Leisingera methylohalidivorans Schaefer et al. 2002, Phaeobacter daeponensis Yoon et al. 2007 and Phaeobacter inhibens Martens et al. 2006.	Vandecandelaere I, Segaert E, Mollica A, Faimali M, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.65844-0	2008	*

References

#17697

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24565

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32650

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28861 (see below)

#60764 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55860

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82853

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID343774.1 )

#28861

IJSEM 2788 2008 ( DOI 10.1099/ijs.0.65844-0 , PubMed 19060059 )

* These data were automatically processed and therefore are not curated

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Leisingera aquimarina DSM 24565 DSM 24565

Leisingera aquimarina DSM 24565 DSM 24565

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