Name: Legionella lansingensis 1677-MI-H
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6765

Type strain:

Species: Legionella lansingensis

Strain Designation: 1677-MI-H

Culture col. no.: DSM 19556, ATCC 49751, CCUG 31227 B, CIP 103542

Strain history: CIP <- 1992, W.L. Thacker, CDC <- J.W. Dyke, Sparrow Hosp., Michigan, USA: strain 1677-MI-H

NCBI tax ID(s): 1122164 (strain), 45067 (species)

SI-ID 42662

ATCC 49751, CCUG 31227 A, CIP 103542, NCTC 12830, CCUG 31227 B, DSM 19556

Section

Legionella lansingensis 1677-MI-H is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from bronchoscopy washings of patient with chronic lymphocytic leukemia.

Gram-negative
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Legionellales*
	Family	*Legionellaceae*
	Genus	*Legionella*
	Species	**Legionella lansingensis**
	Full Scientific Name (LPSN)	Legionella lansingensis Thacker et al. 1994

Information on morphological and physiological properties Morphology

[Ref.: #120557]	Gram stain	negative

[Ref.: #120557]	Cell shape	rod-shaped

[Ref.: #120557]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8173]

Culture medium

BCYE-AGAR (DSMZ Medium 585)

[Ref.: #8173]

Culture medium growth

[Ref.: #8173]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8173]

Culture medium composition

expand / minimize

[Ref.: #34346]

Culture medium

MEDIUM 23 - for Afipia and Legionella

[Ref.: #34346]

Culture medium growth

[Ref.: #34346]

Culture medium composition

expand / minimize

[Ref.: #120557]

Culture medium

CIP Medium 23

[Ref.: #120557]

Culture medium growth

[Ref.: #120557]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #8173]			growth	37 °C
[Ref.: #34346]			growth	37 °C

[Ref.: #8173]	Temperature range	mesophilic
[Ref.: #34346]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8173]

Oxygen tolerance

microaerophile

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120557]		nitrate ChEBI	-	reduction
[Ref.: #120557]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120557]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120557]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120557]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120557]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #50483]

Fatty acid	Percentage	ECL
C17:0 anteiso	26.4	16.722
C15:0 ANTEISO	25	14.711
C16:0 iso	14	15.626
C16:1 ω7c	6.9	15.819
C16:0	6.1	16
C17:1 ω9c ANTEISO	5.8	16.525
C17:0 iso	3.9	16.629
C15:0 ISO	2	14.621
C15:0	1.8	15
C16:1 ISO H	1.7	15.461
C17:1 ω9c ISO	1.2	16.416
C15:1 ω6c	1.1	14.856
C14:0 ISO	0.9	13.618
C17:0 CYCLO	0.9	16.888
C17:0	0.9	17
C20:0	0.7	20
C19:0	0.3	19
C15:0 2OH	0.2	16.217
C18:0	0.2	18
C14:0	0.2	14

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120557]	7572	-	+	-	-	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	d-mannose degradation	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	photosynthesis	71.43	10 of 14
[Ref.: #66794]	purine metabolism	71.28	67 of 94
[Ref.: #66794]	lipid metabolism	70.97	22 of 31
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	lysine metabolism	69.05	29 of 42
[Ref.: #66794]	histidine metabolism	68.97	20 of 29
[Ref.: #66794]	pyrimidine metabolism	68.89	31 of 45
[Ref.: #66794]	glutamate and glutamine metabolism	67.86	19 of 28
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	flavin biosynthesis	66.67	10 of 15
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	glutathione metabolism	64.29	9 of 14
[Ref.: #66794]	pentose phosphate pathway	63.64	7 of 11
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	gluconeogenesis	62.5	5 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	phenylpropanoid biosynthesis	61.54	8 of 13
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	61.54	8 of 13
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	non-pathway related	57.89	22 of 38
[Ref.: #66794]	reductive acetyl coenzyme A pathway	57.14	4 of 7
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	tryptophan metabolism	55.26	21 of 38
[Ref.: #66794]	vitamin B1 metabolism	53.85	7 of 13
[Ref.: #66794]	leucine metabolism	53.85	7 of 13
[Ref.: #66794]	oxidative phosphorylation	51.65	47 of 91
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	methionine metabolism	50	13 of 26
[Ref.: #66794]	heme metabolism	50	7 of 14
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	arginine metabolism	50	12 of 24
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	3-phenylpropionate degradation	46.67	7 of 15
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	cholesterol biosynthesis	45.45	5 of 11
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	arachidonic acid metabolism	44.44	8 of 18
[Ref.: #66794]	cysteine metabolism	44.44	8 of 18
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	41.18	7 of 17
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	degradation of pentoses	35.71	10 of 28
[Ref.: #66794]	isoprenoid biosynthesis	34.62	9 of 26
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	androgen and estrogen metabolism	31.25	5 of 16
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	phenol degradation	30	6 of 20
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	metabolism of disaccharids	27.27	3 of 11
[Ref.: #66794]	d-xylose degradation	27.27	3 of 11
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8173]	Sample type/isolated from	bronchoscopy washings of patient with chronic lymphocytic leukemia
[Ref.: #8173]	Geographic location (country and/or sea, region)	Michigan, Lansing
[Ref.: #8173]	Country	USA
[Ref.: #8173]	Country ISO 3 Code	USA
[Ref.: #8173]	Continent	North America

[Ref.: #50483]	Sample type/isolated from	Human bronchus,54-yr-old woman,pneumonia
[Ref.: #50483]	Sampling date	1987-02-01
[Ref.: #50483]	Geographic location (country and/or sea, region)	Michigan,Lansing
[Ref.: #50483]	Country	USA
[Ref.: #50483]	Country ISO 3 Code	USA
[Ref.: #50483]	Continent	North America

[Ref.: #120557]	Sample type/isolated from	Human, Bronchoscopy washing
[Ref.: #120557]	Geographic location (country and/or sea, region)	Michigan
[Ref.: #120557]	Country	United States of America
[Ref.: #120557]	Country ISO 3 Code	USA
[Ref.: #120557]	Continent	North America
[Ref.: #120557]	Isolation date	1987
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	-
#Host Body Product	#Oral cavity and Airways	#Bronchial wash

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HF937256 (>99% sequence identity) for Legionella from Microbeatlas

Aquatic Samples	60
Soil Samples	34
Animal Samples	8
Plant Samples	2
Total Samples	104

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8173]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #120557]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8173]	Legionella lansingensis partial 16S rRNA gene, type strain DSM 19556T	HF937256	1533	ENA	45067 tax ID
[Ref.: #20218]	Legionella lansingensis strain MDC1595 16S ribosomal RNA gene, partial sequence	JF720421	525	ENA	45067 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Legionella lansingensis DSM 19556 = ATCC 49751	GCA_000622185	scaffold	GenBank	1122164 tax ID	*
[Ref.: #66792]	Legionella lansingensis ATCC 49751	GCA_001467795	scaffold	GenBank	45067 tax ID	*
[Ref.: #66792]	Legionella lansingensis 1677-MI-H	GCA_900640195	scaffold	GenBank	45067 tax ID	*
[Ref.: #66792]	Legionella lansingensis DSM 19556 = ATCC 49751	1122164.4	wgs	PATRIC	1122164 tax ID	*
[Ref.: #66792]	Legionella lansingensis strain ATCC 49751	45067.4	wgs	PATRIC	45067 tax ID	*
[Ref.: #66792]	Legionella lansingensis ATCC 49751	2558309107	draft	JGI IMG/M	1122164 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Legionella lansingensis DSM 19556 = ATCC 49751 ATCC 49751 NCBI: GCA_000622185.1
[Ref.: #69480]	motile	no	76.43	no
[Ref.: #69480]	flagellated	no	95.626	no
[Ref.: #69480]	gram-positive	no	98.483	no
[Ref.: #69480]	anaerobic	no	98.505	no
[Ref.: #69480]	halophile	no	84.2	no
[Ref.: #69480]	spore-forming	no	92.384	no
[Ref.: #69480]	glucose-util	yes	63.162	no
[Ref.: #69480]	aerobic	no	85.853	yes
[Ref.: #69480]	thermophile	no	95.286	no
[Ref.: #69480]	glucose-ferment	no	86.759	no

Availability in culture collections External links

[Ref.: #8173]

Culture collection no.

DSM 19556, ATCC 49751, CCUG 31227 B, CIP 103542

[Ref.: #76235]

SI-ID 42662

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Legionella lansingensis sp. nov. isolated from a patient with pneumonia and underlying chronic lymphocytic leukemia.	Thacker WL, Dyke JW, Benson RF, Havlichek DH Jr, Robinson-Dunn B, Stiefel H, Schneider W, Moss CW, Mayberry WR, Brenner DJ	J Clin Microbiol	10.1128/jcm.30.9.2398-2401.1992	1992	*

References

#8173

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19556

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34346 ; Curators of the CIP;
#50483 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 31227 B

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76235

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42662.1 )

#120557 Collection of Institut Pasteur ; Curators of the CIP; CIP 103542
* These data were automatically processed and therefore are not curated

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Legionella lansingensis DSM 19556 = ATCC 49751 ATCC 49751

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