Name: Cereibacter johrii JA192
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13825

Type strain:

Species: Cereibacter johrii

Strain Designation: JA192

Culture col. no.: DSM 18678, JCM 14543, MTCC 8172, CCUG 53723

Strain history: Ch. Sasikala JA192.

NCBI tax ID(s): 445629 (species)

SI-ID 370648

DSM18678, JCM 14543

Section

Cereibacter johrii JA192 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from pasteurized rhizosphere soil of jowar collected from semi-arid tropical soil.

Gram-negative
motile
ovoid-shaped
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Cereibacter*
	Species	**Cereibacter johrii**
	Full Scientific Name (LPSN)	Cereibacter johrii (Girija et al. 2010) Hördt et al. 2020

	Synonym	"Luteovulum* johrii"*
	Synonym	Rhodobacter johrii

Information on morphological and physiological properties Morphology

[Ref.: #29369]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #29369]	Cell length	1.5-1.9 µm

[Ref.: #29369]	Cell width	0.8-0.9 µm

[Ref.: #29369]	Cell shape	ovoid-shaped

[Ref.: #29369]	Motility	yes

[Ref.: #29369]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29369]	growth	25-35 °C
[Ref.: #29369]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #29369]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29369]			optimum	6.5-7
[Ref.: #29369]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29369]

Oxygen tolerance

anaerobe

[Ref.: #29369]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.909

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29369]		NaCl		growth	0-3	%

[Ref.: #29369]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29369]	acetate ChEBI	+	carbon source
[Ref.: #29369]	fructose ChEBI	+	carbon source
[Ref.: #29369]	glucose ChEBI	+	carbon source
[Ref.: #29369]	glutamate ChEBI	+	carbon source
[Ref.: #29369]	glycerol ChEBI	+	carbon source
[Ref.: #29369]	lactate ChEBI	+	carbon source
[Ref.: #29369]	malate ChEBI	+	carbon source
[Ref.: #29369]	mannitol ChEBI	+	carbon source
[Ref.: #29369]	pyruvate ChEBI	+	carbon source
[Ref.: #29369]	sorbitol ChEBI	+	carbon source
[Ref.: #29369]	succinate ChEBI	+	carbon source
[Ref.: #29369]	valerate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7655]	Sample type/isolated from	pasteurized rhizosphere soil of jowar (sorghum) collected from semi-arid tropical soil
[Ref.: #7655]	Geographic location (country and/or sea, region)	Andhra Pradesh, Godumakunta village near Hyderabad, India
[Ref.: #7655]	Country	India
[Ref.: #7655]	Country ISO 3 Code	IND
[Ref.: #7655]	Continent	Asia

[Ref.: #59990]	Sample type/isolated from	Rhizosphere soil
[Ref.: #59990]	Sampling date	2003-01-23
[Ref.: #59990]	Country	India
[Ref.: #59990]	Country ISO 3 Code	IND
[Ref.: #59990]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Semi-arid soil of Godumakunta Village near Hyderabad
[Ref.: #67770]	Geographic location (country and/or sea, region)	Andhra Paradesh
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere
#Climate	#Hot	#Tropical

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM398152 (>99% sequence identity) for Luteovulum from Microbeatlas

Aquatic Samples	10335
Soil Samples	1540
Animal Samples	4862
Plant Samples	492
Total Samples	17229

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7655]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7655]	Rhodobacter johrii partial 16S rRNA gene, type strain JA192T	AM398152	1430	ENA	445629 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cereibacter johrii JA192	GCA_003046325	scaffold	GenBank	445629 tax ID	*
[Ref.: #66792]	Cereibacter johrii JA192	GCA_001720585	contig	GenBank	445629 tax ID	*
[Ref.: #66792]	Rhodobacter johrii strain JA192	445629.8	wgs	PATRIC	445629 tax ID	*

[Ref.: #7655]	GC-content	65.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29369]	GC-content	65.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cereibacter johrii JA192 NCBI: GCA_003046325.1
[Ref.: #69481]	spore-forming	yes	70	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cereibacter johrii JA192 NCBI: GCA_003046325.1
[Ref.: #69480]	flagellated	no	64.351	no
[Ref.: #69480]	gram-positive	no	98.892	yes
[Ref.: #69480]	anaerobic	yes	51.318	yes
[Ref.: #69480]	halophile	no	88.581	no
[Ref.: #69480]	spore-forming	no	95.957	no
[Ref.: #69480]	thermophile	no	99.174	yes
[Ref.: #69480]	glucose-util	yes	89.154	yes
[Ref.: #69480]	aerobic	no	53.511	no
[Ref.: #69480]	motile	yes	79.692	yes
[Ref.: #69480]	glucose-ferment	no	87.884	no

Availability in culture collections External links

[Ref.: #7655]

Culture collection no.

DSM 18678, JCM 14543, MTCC 8172, CCUG 53723

[Ref.: #83001]

SI-ID 370648

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Szabonella alba gen. nov., sp. nov., a motile alkaliphilic bacterium of the family Rhodobacteraceae isolated from a soda lake.	Szuroczki S, Abbaszade G, Boka K, Schumann P, Neumann-Schaal M, Toth E	Int J Syst Evol Microbiol	10.1099/ijsem.0.005219	2022	*

References

#7655

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18678

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29369

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25778 (see below)

#59990 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53723

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83001

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID370648.1 )

#25778

IJSEM 2099 2010 ( DOI 10.1099/ijs.0.011718-0 , PubMed 19854875 )

* These data were automatically processed and therefore are not curated

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