Name: Stella humosa DSM 5900
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 64

Type strain:

Species: Stella humosa

Culture col. no.: DSM 5900, ATCC 43930, AUCM B-1137, BKM B-1137, DSM 3698, VKM B-1137

Strain history: <- VKM

NCBI tax ID(s): 94 (species)

SI-ID 42130

ATCC 43930, VKM B-1137, DSM 5900, DSM 3698

Section

Stella humosa DSM 5900 is a chemoorganotroph, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from soil.

colony-forming
Gram-negative
star-shaped
chemoorganotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Stellaceae*
	Genus	*Stella*
	Species	**Stella humosa**
	Full Scientific Name (LPSN)	Stella humosa Vasilyeva 1985

Information on morphological and physiological properties Morphology

[Ref.: #23248]	Gram stain	negative

[Ref.: #23248]	Cell length	0.7-3.0 µm

[Ref.: #23248]	Cell shape	star-shaped

[Ref.: #23248]	Motility	no

[Ref.: #23248]	Colony size	2.5 mm
[Ref.: #23248]	Colony color	greyish white
[Ref.: #23248]	Colony shape	circular
[Ref.: #23248]	Incubation period	14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2352]

Culture medium

ANCALOMICROBIUM MEDIUM (DSMZ Medium 603)

[Ref.: #2352]

Culture medium growth

[Ref.: #2352]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2352]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2352]			growth	28-30 °C
[Ref.: #23248]			optimum	28-30 °C

[Ref.: #2352]	Temperature range	mesophilic
[Ref.: #23248]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #23248]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23248]

Nutrition type

chemoorganotroph

[Ref.: #23248]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23248]	2-oxoglutarate ChEBI	-	growth
[Ref.: #23248]	acetate ChEBI	+	growth
[Ref.: #23248]	butyrate ChEBI	-	growth
[Ref.: #23248]	cellulose ChEBI	-	hydrolysis
[Ref.: #23248]	citrate ChEBI	+	growth
[Ref.: #23248]	D-alanine ChEBI	-	growth
[Ref.: #23248]	formate ChEBI	-	growth
[Ref.: #23248]	fumarate ChEBI	-	growth
[Ref.: #23248]	gelatin ChEBI	-	hydrolysis
[Ref.: #23248]	gluconate ChEBI	-	growth
[Ref.: #23248]	L-alanine ChEBI	-	growth
[Ref.: #23248]	L-arginine ChEBI	-	growth
[Ref.: #23248]	L-asparagine ChEBI	-	growth
[Ref.: #23248]	L-aspartate ChEBI	-	growth
[Ref.: #23248]	L-cysteine ChEBI	+	growth
[Ref.: #23248]	L-cystine ChEBI	+	growth
[Ref.: #23248]	L-glutamate ChEBI	+	growth
[Ref.: #23248]	L-glutamine ChEBI	-	growth
[Ref.: #23248]	L-histidine ChEBI	-	growth
[Ref.: #23248]	L-lysine ChEBI	+	growth
[Ref.: #23248]	L-serine ChEBI	-	growth
[Ref.: #23248]	lactate ChEBI	+	growth
[Ref.: #23248]	malate ChEBI	+	growth
[Ref.: #23248]	pyruvate ChEBI	+	growth
[Ref.: #23248]	starch ChEBI	-	hydrolysis
[Ref.: #23248]	succinate ChEBI	+	growth
[Ref.: #23248]	threonine ChEBI	-	growth
[Ref.: #23248]	valerate ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic intermediate	Concentration
[Ref.: #23248]	neomycin ChEBI	yes	0.5-1	µg/mL
[Ref.: #23248]	paromomycin sulfate ChEBI				yes	2-10	µg/mL
[Ref.: #23248]	penicillin ChEBI				yes	8	µg/mL

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #23248]		catalase	+	1.11.1.6
[Ref.: #23248]		cytochrome oxidase	+	1.9.3.1

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	ketogluconate metabolism	100	8 of 8
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	ethylmalonyl-CoA pathway	100	5 of 5
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	gallate degradation	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	91.67	11 of 12
[Ref.: #66794]	proline metabolism	90.91	10 of 11
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	glutamate and glutamine metabolism	89.29	25 of 28
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	glutathione metabolism	85.71	12 of 14
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	alanine metabolism	82.76	24 of 29
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	vitamin K metabolism	80	4 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	starch degradation	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	histidine metabolism	79.31	23 of 29
[Ref.: #66794]	arginine metabolism	79.17	19 of 24
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	lysine metabolism	76.19	32 of 42
[Ref.: #66794]	carnitine metabolism	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	biotin biosynthesis	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	degradation of pentoses	75	21 of 28
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	degradation of sugar alcohols	75	12 of 16
[Ref.: #66794]	phenol degradation	75	15 of 20
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	purine metabolism	74.47	70 of 94
[Ref.: #66794]	lipid metabolism	74.19	23 of 31
[Ref.: #66794]	3-phenylpropionate degradation	73.33	11 of 15
[Ref.: #66794]	methionine metabolism	73.08	19 of 26
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	oxidative phosphorylation	72.53	66 of 91
[Ref.: #66794]	cysteine metabolism	72.22	13 of 18
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	tryptophan metabolism	71.05	27 of 38
[Ref.: #66794]	coenzyme M biosynthesis	70	7 of 10
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	61.54	8 of 13
[Ref.: #66794]	creatinine degradation	60	3 of 5
[Ref.: #66794]	degradation of sugar acids	60	15 of 25
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	60	6 of 10
[Ref.: #66794]	polyamine pathway	56.52	13 of 23
[Ref.: #66794]	degradation of hexoses	55.56	10 of 18
[Ref.: #66794]	pyrimidine metabolism	55.56	25 of 45
[Ref.: #66794]	allantoin degradation	55.56	5 of 9
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	androgen and estrogen metabolism	50	8 of 16
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	ascorbate metabolism	50	11 of 22
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	vitamin B12 metabolism	47.06	16 of 34
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	cholesterol biosynthesis	45.45	5 of 11
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	aclacinomycin biosynthesis	42.86	3 of 7
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	carotenoid biosynthesis	36.36	8 of 22
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	chlorophyll metabolism	27.78	5 of 18
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	daunorubicin biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2352]	Sample type/isolated from	soil
[Ref.: #2352]	Geographic location (country and/or sea, region)	Krasnodar
[Ref.: #2352]	Country	Russia
[Ref.: #2352]	Country ISO 3 Code	RUS
[Ref.: #2352]	Continent	Europe

[Ref.: #23248]	Sample type/isolated from	Virgin chernozem
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ535710 (>99% sequence identity) for Stella humosa from Microbeatlas

Aquatic Samples	46
Soil Samples	12
Animal Samples	15
Plant Samples	8
Total Samples	81

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2352]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Stella humosa 16S rRNA gene, strain DSM5900	AJ535710	1447	ENA	94 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Stella humosa DSM 5900	GCA_003751345	contig	GenBank	94 tax ID	*
[Ref.: #66792]	Stella humosa ATCC 43930	GCA_006738645	complete	GenBank	94 tax ID	*
[Ref.: #66792]	Stella humosa strain ATCC 43930	94.5	complete	PATRIC	94 tax ID	*
[Ref.: #66792]	Stella humosa strain DSM 5900	94.4	wgs	PATRIC	94 tax ID	*
[Ref.: #66792]	Stella humosa DSM 5900	2788499841	draft	JGI IMG/M	94 tax ID	*

[Ref.: #23248]

GC-content

72.70 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Stella humosa ATCC 43930 NCBI: GCA_006738645.1
[Ref.: #69480]	motile	no	87.41	yes
[Ref.: #69480]	flagellated	no	94.246	yes
[Ref.: #69480]	gram-positive	no	98.413	no
[Ref.: #69480]	anaerobic	no	98.499	no
[Ref.: #69480]	aerobic	yes	94.043	no
[Ref.: #69480]	halophile	no	90.738	no
[Ref.: #69480]	spore-forming	no	95.574	yes
[Ref.: #69480]	thermophile	no	97.215	no
[Ref.: #69480]	glucose-util	yes	77.022	no
[Ref.: #69480]	glucose-ferment	no	90.399	no

Availability in culture collections External links

[Ref.: #2352]

Culture collection no.

DSM 5900, ATCC 43930, AUCM B-1137, BKM B-1137, DSM 3698, VKM B-1137

[Ref.: #69748]

SI-ID 42130

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequences of Three Star-Shaped Bacteria, Stella humosa, Stella vacuolata, and Stella Species ATCC 35155.	Shibai A, Maeda T, Kawada M, Kotani H, Sakata N, Furusawa C	Microbiol Resour Announc	10.1128/MRA.00719-19	2019	*
Phylogeny	Phylogenetic relationships of the genera Stella, Labrys and Angulomicrobium within the 'Alphaproteobacteria' and description of Angulomicrobium amanitiforme sp. nov.	Fritz I, Strompl C, Abraham WR	Int J Syst Evol Microbiol	10.1099/ijs.0.02746-0	2004	*

References

#2352

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5900

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23248

L. V. VASILYEVA: Stella, a New Genus of Soil Prosthecobacteria, with Proposals for Stella humosa sp. nov. and Stella vacuolata sp. nov.. IJSEM 35: 518 - 521 1985 ( DOI 10.1099/00207713-35-4-518 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69748

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42130.1 )

* These data were automatically processed and therefore are not curated

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Stella humosa ATCC 43930

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