Name: Alteribacillus iranensis X5B
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1317

Type strain:

Species: Alteribacillus iranensis

Strain Designation: X5B

Culture col. no.: DSM 23995, IBRC 10446

Strain history: <- M. A. Amoozegar, Univ. Tehran, Iran; X5 <- M. Bagheri

NCBI tax ID(s): 930128 (species)

SI-ID 406675

DSM 23995

Section

Alteribacillus iranensis X5B is an aerobe, spore-forming, mesophilic bacterium that was isolated from mud of a hypersaline lake.

motile
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Alteribacillus*
	Species	**Alteribacillus iranensis**
	Full Scientific Name (LPSN)	Alteribacillus iranensis (Bagheri et al. 2012) Azmatunnisa Begum et al. 2016

Synonym

Bacillus iranensis

Information on morphological and physiological properties Morphology

[Ref.: #30213]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30213]	Cell length	1.2-2.5 µm
[Ref.: #25003]	Cell length	1.2-2.5 µm

[Ref.: #30213]	Cell width	0.5-0.9 µm
[Ref.: #25003]	Cell width	0.5-0.9 µm

[Ref.: #30213]	Cell shape	rod-shaped
[Ref.: #25003]	Cell shape	rod-shaped

[Ref.: #30213]	Motility	yes
[Ref.: #25003]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.346

[Ref.: #30213]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17472]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17472]

Culture medium growth

[Ref.: #17472]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17472]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17472]	growth	30 °C
[Ref.: #25003]	growth	25-45 °C
[Ref.: #25003]	optimum	35 °C
[Ref.: #30213]	growth	25-45 °C
[Ref.: #30213]	optimum	35 °C

[Ref.: #17472]	Temperature range	mesophilic
[Ref.: #25003]	Temperature range	mesophilic
[Ref.: #30213]	Temperature range	mesophilic

		pH
[Ref.: #25003]	optimum	7.5
[Ref.: #30213]	optimum	7.5
[Ref.: #25003]	growth	7.0-10.0
[Ref.: #30213]	growth	07-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30213]

Oxygen tolerance

aerobe

[Ref.: #25003]	Type of spore	endospore
[Ref.: #25003]	Ability of spore formation	yes
[Ref.: #30213]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Salt		Salt conc.
[Ref.: #25003]	NaCl	growth	2.5-15.0	%(w/v)
[Ref.: #25003]	NaCl	optimum	5.0-7.5	%(w/v)
[Ref.: #30213]	NaCl	growth	2.5-15	%
[Ref.: #30213]	NaCl	optimum	5-7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25003]	(S)-lactate ChEBI	-	carbon source
[Ref.: #30213]	alanine ChEBI	+	carbon source
[Ref.: #25003]	casein	-	hydrolysis
[Ref.: #25003]	cellobiose ChEBI	+	carbon source
[Ref.: #30213]	cellobiose ChEBI	+	carbon source
[Ref.: #25003]	D-arabinose ChEBI	-	carbon source
[Ref.: #25003]	D-fructose ChEBI	-	builds acid from
[Ref.: #25003]	D-galactose ChEBI	-	builds gas from
[Ref.: #25003]	D-galactose ChEBI	-	builds acid from
[Ref.: #25003]	D-mannitol ChEBI	-	carbon source
[Ref.: #25003]	D-mannitol ChEBI	+	carbon source
[Ref.: #25003]	D-mannitol ChEBI	+	builds acid from
[Ref.: #25003]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #25003]	D-xylose ChEBI	-	builds gas from
[Ref.: #25003]	D-xylose ChEBI	-	builds acid from
[Ref.: #30213]	fructose ChEBI	+	carbon source
[Ref.: #25003]	glucose ChEBI	-	builds acid from
[Ref.: #25003]	glycerol ChEBI	-	carbon source
[Ref.: #25003]	lactose ChEBI	-	builds gas from
[Ref.: #25003]	lactose ChEBI	-	builds acid from
[Ref.: #25003]	maltose ChEBI	-	builds acid from
[Ref.: #25003]	methionine ChEBI	-	carbon source
[Ref.: #25003]	nitrate ChEBI	+	reduction
[Ref.: #30213]	nitrate ChEBI	+	reduction
[Ref.: #25003]	raffinose ChEBI	-	builds acid from
[Ref.: #25003]	salicin ChEBI	-	builds gas from
[Ref.: #25003]	salicin ChEBI	-	builds acid from
[Ref.: #25003]	starch ChEBI	-	hydrolysis
[Ref.: #25003]	sucrose ChEBI	-	builds gas from
[Ref.: #25003]	sucrose ChEBI	-	builds acid from
[Ref.: #25003]	trehalose ChEBI	-	builds acid from
[Ref.: #25003]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30213]		catalase	+	1.11.1.6
[Ref.: #30213]		cytochrome oxidase	+	1.9.3.1

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	propionate fermentation	100	10 of 10
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	gallate degradation	100	5 of 5
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	tetrahydrofolate metabolism	92.86	13 of 14
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	4-hydroxyphenylacetate degradation	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	vitamin B12 metabolism	85.29	29 of 34
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	alanine metabolism	82.76	24 of 29
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	tryptophan metabolism	78.95	30 of 38
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	biotin biosynthesis	75	3 of 4
[Ref.: #66794]	purine metabolism	73.4	69 of 94
[Ref.: #66794]	peptidoglycan biosynthesis	73.33	11 of 15
[Ref.: #66794]	methionine metabolism	73.08	19 of 26
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	pyrimidine metabolism	68.89	31 of 45
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	arginine metabolism	66.67	16 of 24
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	lysine metabolism	61.9	26 of 42
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	oxidative phosphorylation	60.44	55 of 91
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	phenol degradation	60	12 of 20
[Ref.: #66794]	histidine metabolism	58.62	17 of 29
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	pentose phosphate pathway	54.55	6 of 11
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	lipid metabolism	51.61	16 of 31
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	Entner Doudoroff pathway	50	5 of 10
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	50	1 of 2
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	cholesterol biosynthesis	45.45	5 of 11
[Ref.: #66794]	allantoin degradation	44.44	4 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	44.44	4 of 9
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	starch degradation	40	4 of 10
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	glycogen metabolism	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	ginsenoside metabolism	37.5	6 of 16
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	glycine metabolism	30	3 of 10
[Ref.: #66794]	degradation of pentoses	28.57	8 of 28
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	tyrosine metabolism	28.57	4 of 14
[Ref.: #66794]	chlorophyll metabolism	27.78	5 of 18
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	metabolism of disaccharids	27.27	3 of 11
[Ref.: #66794]	degradation of sugar alcohols	25	4 of 16
[Ref.: #66794]	dTDPLrhamnose biosynthesis	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	degradation of sugar acids	24	6 of 25
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17472]	Sample type/isolated from	mud of a hypersaline lake
[Ref.: #17472]	Geographic location (country and/or sea, region)	Lake Aran-Bidgol (34.64378° N 51.83838° E)
[Ref.: #17472]	Country	Iran
[Ref.: #17472]	Country ISO 3 Code	IRN
[Ref.: #17472]	Continent	Asia
[Ref.: #17472]	Geographic location	34.6438°/51.8384°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ433452 (>99% sequence identity) for Alteribacillus iranensis subclade from Microbeatlas

Aquatic Samples	10
Soil Samples	5
Animal Samples	6
Plant Samples	1
Total Samples	22

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17472]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17472]	Alteribacillus iranensis strain X5B 16S ribosomal RNA gene, partial sequence	HQ433452	1439	ENA	930128 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alteribacillus iranensis DSM 23995	GCA_900113025	scaffold	GenBank	930128 tax ID	*
[Ref.: #66792]	Alteribacillus iranensis strain DSM 23995	930128.3	wgs	PATRIC	930128 tax ID	*
[Ref.: #66792]	Alteribacillus iranensis DSM 23995	2651870176	draft	JGI IMG/M	930128 tax ID	*

[Ref.: #17472]	GC-content	42.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #25003]	GC-content	41 mol%
[Ref.: #30213]	GC-content	42.4 mol%
[Ref.: #17472]	GC-content	41.0 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alteribacillus iranensis DSM 23995 NCBI: GCA_900113025.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alteribacillus iranensis DSM 23995 NCBI: GCA_900113025.1
[Ref.: #69480]	motile	yes	87.474	yes
[Ref.: #69480]	flagellated	no	53.624	no
[Ref.: #69480]	gram-positive	yes	85.786	no
[Ref.: #69480]	anaerobic	no	95.213	no
[Ref.: #69480]	aerobic	yes	90.493	yes
[Ref.: #69480]	halophile	yes	84.452	no
[Ref.: #69480]	spore-forming	yes	91.964	no
[Ref.: #69480]	glucose-ferment	no	96.108	no
[Ref.: #69480]	thermophile	no	98.075	yes
[Ref.: #69480]	glucose-util	yes	74.551	no

Availability in culture collections External links

[Ref.: #17472]

Culture collection no.

DSM 23995, IBRC 10446

[Ref.: #70967]

SI-ID 406675

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thalassorhabdus alkalitolerans gen. nov., sp. nov., a novel Bacillaceae member isolated from marine sediment.	Sultanpuram VR, Mothe T	Int J Syst Evol Microbiol	10.1099/ijsem.0.002931	2018	*
Phylogeny	Bacillus piscicola sp. nov., isolated from Thai fish sauce (Nam-pla).	Daroonpunt R, Itoh T, Kudo T, Ohkuma M, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.000851	2015	*
Phylogeny	Bacillus iranensis sp. nov., a moderate halophile from a hypersaline lake.	Bagheri M, Didari M, Amoozegar MA, Schumann P, Sanchez-Porro C, Mehrshad M, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.030874-0	2011	*

References

#17472

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23995

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25003

M. V. Azmatunnisa Begum, V.,Rahul, K.,Chandana, A.,Sasikala, C.,Ramana, C. V.: Description of Alteribacillus alkaliphilus sp. nov., reassignment of Bacillus iranensis (Bagheri et al. 2012) as Alteribacillus iranensis comb. nov. and emended description of the genus Alteribacillus. IJSEM 66: 4772 - 4778 2016 ( DOI 10.1099/ijsem.0.001428 , PubMed 27530438 )

#30213

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26557 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70967

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406675.1 )

#26557

IJSEM 811 2012 ( DOI 10.1099/ijs.0.030874-0 , PubMed 21571930 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Alteribacillus iranensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Alteribacillus iranensis DSM 23995

Alteribacillus iranensis DSM 23995

Change proposal

Change proposal