Name: Saccharomonospora azurea NA-128
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13433

Type strain:

Species: Saccharomonospora azurea

Strain Designation: NA-128

Culture col. no.: DSM 44631, ATCC 43670, IFO 14651, JCM 7551, KCTC 9475, KCTC 9693, MTCC 1552, NBRC 14651, NCIMB 12630, SIIA 86128, BCRC 16220, CGMCC 4.1328, IMSNU 20117, IFO (now NBRC) 14651

Strain history: R. Hu NA-128.

NCBI tax ID(s): 882081 (strain), 40988 (species)

SI-ID 41976

ATCC 43670, JCM 7551, IFO 14651, NCIMB 12630, DSM 44631, KCTC 9475, KCTC 9693, NBRC 14651, BCRC 16220, CCRC 16220, CGMCC 4.1328

Other strains from Saccharomonospora azurea

S. azurea CCUG 26487

Section

Saccharomonospora azurea NA-128 is an aerobe, mesophilic, Gram-positive bacterium that builds an aerial mycelium and was isolated from soil.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharomonospora*
	Species	**Saccharomonospora azurea**
	Full Scientific Name (LPSN)	Saccharomonospora azurea Runmao 1987

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

[Ref.: #20082]	Colony color	Colorless
[Ref.: #20082]	Incubation period	10-14 days
[Ref.: #20082]	Cultivation medium used	ISP 2

[Ref.: #20082]	Colony color	Colorless
[Ref.: #20082]	Incubation period	10-14 days
[Ref.: #20082]	Cultivation medium used	ISP 3

[Ref.: #20082]	Colony color	Colorless
[Ref.: #20082]	Incubation period	10-14 days
[Ref.: #20082]	Cultivation medium used	ISP 4

[Ref.: #20082]	Colony color	Colorless
[Ref.: #20082]	Incubation period	10-14 days
[Ref.: #20082]	Cultivation medium used	ISP 5

[Ref.: #20082]	Colony color	Colorless
[Ref.: #20082]	Incubation period	10-14 days
[Ref.: #20082]	Cultivation medium used	ISP 6

[Ref.: #20082]	Colony color	Colorless
[Ref.: #20082]	Incubation period	10-14 days
[Ref.: #20082]	Cultivation medium used	ISP 7

[Ref.: #20082]	Multicellular complex forming ability	yes
[Ref.: #20082]	Multicellular complex name	Aerial Mycelium
[Ref.: #20082]	Multicellular complex color	White
[Ref.: #20082]	Medium Name (multicellularity)	ISP 2

[Ref.: #20082]	Multicellular complex forming ability	yes
[Ref.: #20082]	Multicellular complex name	Aerial Mycelium
[Ref.: #20082]	Multicellular complex color	White
[Ref.: #20082]	Medium Name (multicellularity)	ISP 3

[Ref.: #20082]	Multicellular complex forming ability	yes
[Ref.: #20082]	Multicellular complex name	Aerial Mycelium
[Ref.: #20082]	Multicellular complex color	White
[Ref.: #20082]	Medium Name (multicellularity)	ISP 4

[Ref.: #20082]	Multicellular complex forming ability	yes
[Ref.: #20082]	Multicellular complex name	Aerial Mycelium
[Ref.: #20082]	Multicellular complex color	White
[Ref.: #20082]	Medium Name (multicellularity)	ISP 5

[Ref.: #20082]	Multicellular complex forming ability	yes
[Ref.: #20082]	Multicellular complex name	Aerial Mycelium
[Ref.: #20082]	Multicellular complex color	White
[Ref.: #20082]	Medium Name (multicellularity)	ISP 6

[Ref.: #20082]	Multicellular complex forming ability	yes
[Ref.: #20082]	Multicellular complex name	Aerial Mycelium
[Ref.: #20082]	Multicellular complex color	White
[Ref.: #20082]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11940]

Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

[Ref.: #11940]

Culture medium growth

[Ref.: #11940]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11940]

Culture medium composition

expand / minimize

[Ref.: #20082]

Culture medium

ISP 2

[Ref.: #20082]

Culture medium growth

[Ref.: #20082]

Culture medium composition

expand / minimize

[Ref.: #20082]

Culture medium

ISP 3

[Ref.: #20082]

Culture medium growth

[Ref.: #20082]

Culture medium composition

expand / minimize

[Ref.: #20082]

Culture medium

ISP 4

[Ref.: #20082]

Culture medium growth

[Ref.: #20082]

Culture medium composition

expand / minimize

[Ref.: #20082]

Culture medium

ISP 5

[Ref.: #20082]

Culture medium growth

[Ref.: #20082]

Culture medium composition

expand / minimize

[Ref.: #20082]

Culture medium

ISP 6

[Ref.: #20082]

Culture medium growth

[Ref.: #20082]

Culture medium composition

expand / minimize

[Ref.: #20082]

Culture medium

ISP 7

[Ref.: #20082]

Culture medium growth

[Ref.: #20082]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #11940]	growth	28 °C
[Ref.: #20082]	optimum	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #11940]	Temperature range	mesophilic
[Ref.: #20082]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #20082]		NaCl		maximum	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #20082]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #20082]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #20082]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #20082]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #20082]	mannitol ChEBI	-
[Ref.: #20082]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #20082]	raffinose ChEBI	-
[Ref.: #20082]	rhamnose ChEBI	-
[Ref.: #20082]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #20082]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #20082]	630	-	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20082]	863	not determinedn.d.	+	-	+	-	+	+	+	+	-	+	+	-	-	-	+	+	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11940]	Sample type/isolated from	soil
[Ref.: #11940]	Geographic location (country and/or sea, region)	Sichuan, Guangyuan City
[Ref.: #11940]	Country	China
[Ref.: #11940]	Country ISO 3 Code	CHN
[Ref.: #11940]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Guangyuan City, Sichuan
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Guangyuan city, Sichuan
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Z38017 (>99% sequence identity) for Saccharomonospora azurea from Microbeatlas

Aquatic Samples	132
Soil Samples	805
Animal Samples	533
Plant Samples	248
Total Samples	1718

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11940]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20082]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	S.azurea gene for 16S ribosomal RNA	Z38017	1491	ENA	40988 tax ID	*
[Ref.: #20218]	Saccharomonospora azurea strain K161 16S-23S ribosomal RNA gene, internal transcribed spacer	U73397	185	ENA	882081 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Saccharomonospora azurea NA-128	GCA_000231055	chromosome	GenBank	882081 tax ID
[Ref.: #66792]	Saccharomonospora azurea NA-128	882081.3	wgs	PATRIC	882081 tax ID	*
[Ref.: #66792]	Saccharomonospora azurea NA-128, DSM 44631	2508501044	draft	JGI IMG/M	882081 tax ID	*

[Ref.: #67770]

GC-content

70.08 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharomonospora azurea NA-128 NA-128 NCBI: GCA_000231055.3
[Ref.: #69480]	motile	no	92.049	no
[Ref.: #69480]	flagellated	no	97.074	no
[Ref.: #69480]	gram-positive	yes	92.052	yes
[Ref.: #69480]	anaerobic	no	98.732	yes
[Ref.: #69480]	halophile	yes	59.376	no
[Ref.: #69480]	spore-forming	yes	76.225	no
[Ref.: #69480]	glucose-util	yes	85.736	no
[Ref.: #69480]	aerobic	yes	90.641	yes
[Ref.: #69480]	thermophile	no	80.485	no
[Ref.: #69480]	glucose-ferment	no	92.508	no

Availability in culture collections External links

[Ref.: #11940]

Culture collection no.

DSM 44631, ATCC 43670, IFO 14651, JCM 7551, KCTC 9475, KCTC 9693, MTCC 1552, NBRC 14651, NCIMB 12630, SIIA 86128, BCRC 16220, CGMCC 4.1328, IMSNU 20117, IFO (now NBRC) 14651

[Ref.: #82626]

SI-ID 41976

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharomonospora piscinae sp. nov., a novel actinobacterium from fishpond sediment in Taiwan.	Tseng M, Chiang WP, Liao HC, Hsieh SY, Yuan GF	Int J Syst Evol Microbiol	10.1099/ijsem.0.002653	2018	*
Genetics	Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128(T)).	Klenk HP, Held B, Lucas S, Lapidus A, Copeland A, Hammon N, Pitluck S, Goodwin LA, Han C, Tapia R, Brambilla EM, Potter G, Land M, Ivanova N, Rohde M, Goker M, Detter JC, Kyrpides NC, Woyke T	Stand Genomic Sci	10.4056/sigs.2635833	2012	*
Phylogeny	Saccharomonospora saliphila sp. nov., a halophilic actinomycete from an Indian soil.	Syed DG, Tang SK, Cai M, Zhi XY, Agasar D, Lee JC, Kim CJ, Jiang CL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65449-0	2008	*

References

#11940

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44631

#20082

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82626

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41976.1 )

* These data were automatically processed and therefore are not curated

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Saccharomonospora azurea NA-128 NA-128

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